Glyma02g00440 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g00440): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g00440): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g00440

Feature Type:	gene_model
Chromosome:	Gm02
Start:	237612
stop:	245017
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63410	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:23415816-23417002 REVERSE LENGTH=338	SoyBase	E_val: 2.00E-178	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010189	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process	SoyBase	N/A	ISS
GO:0010236	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastoquinone biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
GO:0051741	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	SoyBase	N/A	ISS
KOG1540	KOG	Ubiquinone biosynthesis methyltransferase COQ5	JGI		ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF9	Panther	CHLOROPLAST INNER ENVELOPE PROTEIN	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9RTI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast inner envelope protein, putative n=1 Tax=Ricinus communis RepID=B9RTI4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JB52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB52_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g00440 not represented in the dataset	Glyma02g00440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g002000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g00440

Limit To All Plant Sequences

>Glyma02g00440.2   sequence type=transcript   gene model=Glyma02g00440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAAAACTCTAATTTATGAATTGGAGGTTATCTAGTAAATACAGAAAATCCAAAGCGCATATAGTTCAAGTGATGGTAAGGCCACAACTCACAAGTGGCAAGCATCAGCTAGCGCCAGGATTATGTGGTGCATATCCACCAATCCCCTGTCTTTGTCCCTCACCTCATAATCCTTACTATCACCACTTTACCACTTCCACGCTTATTTCTAATTGATCCTTTTCCTGTCTTGTTTTCATGACATAAACTATCATCAACTGTTGCTTTCCATTTTGGCTATAATTCCACAAAATGTGCCATTCATTGCAAGTGTAATATTACTAGCATTTCCATATATCAGTCCATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGTCAGCATCATCATCATCATCATCTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAAGTTTGGAGAAAGTAACTCGGGTAGGAAGGTCAAGTTTTCCCTCCACACATCTCTAAACGACTGTTTGTGAAGGATAATAATTCAATCTTGAATCTTTCCATCTTGCCAACATAGTAGGAAAGAGTTACTTAAGGATGAAATGCTTCAAAACCATTAGCTTAGTTTTGTGCCATTACTAGCTTCACTATGTTTTGTATTTGTCATTGTTGCTTTGGCAGAGAAATATAGAATGTGTGTTGGCAGCCAATTGTTCAATGAACCATGGCAGGATCATCAAAATGTTGTGCTTCTTTTGCTTTGCTTTGTACCAAATGGACAAGACAAGATCTACTCTGACCAAAGGAAAATGATTTTATGCTGAATTGTTCTACACGAAAGCCAACAAAGTGATTTCATTGCATGAGAAAGGGTGTATGATGAGAATCCTAAAACTGACCAAATACAGGCTAAAGGCCCAAGTGGAGAAGGACGAATGTCCAAGTGGAGAAGGATAAAGCCCCCGAGTGGAGAAGGATGAAGACCCAAGTGGAGAAGGATGAAGGCCCAGAGGCAGAGACACTATCAAGACTATTAATTGTTGCTGAAGACCCAAACTAATTTAAAGGACAAAGTTAAATATGTTTTTAGTTATAATTTTTATTTATTGTAATTTTGGCTCAAACTGTTTAGAAGGCCAATGTCTATTTTTATCTTTTTGTTCAGATACACTATAAGTATTGGTTTTTATTTTCAATAAAGAAAAACT

Coding sequences of Glyma02g00440

Limit To All Plant Sequences

>Glyma02g00440.1   sequence type=CDS   gene model=Glyma02g00440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGTCAGCATCATCATCATCATCATCTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAA

>Glyma02g00440.2   sequence type=CDS   gene model=Glyma02g00440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGTCAGCATCATCATCATCATCATCTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAA

Predicted protein sequences of Glyma02g00440

Limit To All Plant Sequences

>Glyma02g00440.1   sequence type=predicted peptide   gene model=Glyma02g00440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMLNGAHQNPNLISGIAPNGLNFHNKCLFQKGVLSHGNKLRVVRKNFTPKGSMSASSSSSSRPGSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYNRNLRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGITEAYRVLRIGGIACVIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVKKPVNPFVFLYRFILGTIASTYFVLVPIYMWIKDKIVPRGMPI*

>Glyma02g00440.2   sequence type=predicted peptide   gene model=Glyma02g00440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMLNGAHQNPNLISGIAPNGLNFHNKCLFQKGVLSHGNKLRVVRKNFTPKGSMSASSSSSSRPGSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYNRNLRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGITEAYRVLRIGGIACVIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVKKPVNPFVFLYRFILGTIASTYFVLVPIYMWIKDKIVPRGMPI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain