Glyma02g00430 - SoyBase

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Report for Sequence Feature Glyma02g00430

Feature Type:	gene_model
Chromosome:	Gm02
Start:	232994
stop:	236637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55760	AT	Annotation by Michelle Graham. TAIR10: unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). \| chr3:20700648-20702886 FORWARD LENGTH=578	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
UniRef100_I1JB51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB51_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R1Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1Z4_ORYSJ	SoyBase	E_val: 5.00E-172	ISS

Expression Patterns of Glyma02g00430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g001900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00430

Limit To All Plant Sequences

>Glyma02g00430.1   sequence type=CDS   gene model=Glyma02g00430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCCGTATAAATACTCAGAAGTGTTTGAGAGTCACAGTCAGTTAGCCATTCCTGAGTCACACGCTCTGATCTTCATGAATCTAGGAACCTGCGCCGCGGGTGCACCGTACCGTTGGGTGCACCTTCTCCCTCACGAAGGAAAGAGAAGATGTGCGAGTGTGAGAGTGAGAGCGAATGCGAGTGTTGGAGGAGGAAAAGGAGATGGCGAAACGGCGTCGTATTTGGACATGTGGAAGAAGGCGGTGGAGAGAGAGAGGAAGAGCGCGAGCTTCAACTCAATAGCGGACCGCGTGGCGGCAAATACTGATGACAACAACGACGACGATCTGGAGAAGAAGACCAGTGAGTTCCAGAAGCTCCTCCAAGTCTCCGCCGAAGAGCGCGACAGGGTGCAGCGCATGCAGGTCATCGATCGCGCCGCCGCCGCCATCGCCGCCGCCAGGCAACTCCTTCAGGAACGCAGTGCCGCCGATTCCAGCCACCACGAAGCCACCGCCGACGAACGACGTGACGAATCAGGTTCAGGAATGGGAGTGCAGAGTGAGGGTATTCGTGTGTCAGAGTCAGAAACAAGGGGAAATGGTGTGCCTGGCCCTGATTTTTGGTCCTGGACACCCCCTGTGGAGAGTGATGTTCCTTCAGATGATGGCAGTGGGCTGCAGTTAGATACCAAGTCTTCTGTTCGTCCAACCTTGCCCAGTGCGGTTGTGGAGAAGGAGTGGACACCACAATTTCTCTCCATTCCATTTGAGAGTTTACTTTCTCAAAGCGAGCGTAGTGATACTCTTCCACCCTTTCAGTCATTTTTAGAGGTTGAGGAAGCTGAAACTACCTCAGACCCAGAGTCACTTTCTGAATCGCCTTCACTGTCACTTTCCTTGGAAGAGGAACAGATACATGGTGAATCGTCTTTTGATTATGCAGCAGAAGCAGCACATGCCCTCAGTGAGGCAAATAAATCATCACCTATTGGAGTGAATCCGGACGGATCGAGATGGTGGAAAGAGACAGGAATTGAGCGAAGACCTGATGGCGTGATCTGCAGATGGACAATGACCAGAGGTGTTAGTGCTGACAAAGCTATTGAGTGGCAAGAGAAGTACTGGGAAGCTTCTGATGATTTTGGCTATAAGGAACTTGGTTCAGAGAAATCTGGACGTGATGCAAATGGAAATATTTGGCGTGAATTTTGGAGAGAATCCTTGTGTCTGGAAAATGGGCTTATGAGTTTTGAGAAAACTGCAGACAAGTGGGGACGAAATGTTAATGGTAATGAGTGGCAGGAAAAATGGGGGGAGCGCTACAATGCTGCTGGTCAAACAGAAAAATGGGCACACAAGTGGTGCAGTATTGACCCAAACACACCGCTTGAACCTGGACATGCTCATGTTTGGCATGAAAGGTGGGGTGGCAAATACGACGGGTACGGTGGGAGCATAAAATACACCGACAAATGGGCCGAGCGGTTTGTGGATGGTGGATGGGATAAATGGGGTGACAAATGGGATGAAAATTTTGATCCAAATGCTAATGGTGTGAAGCAGGGGGAGAGCTGGTGGGAAGGTAGGCATGGCGACCGCTGGAACCGAACTTGGGGTGAGCAACACAATGGCTCTGGTTGGATTCACAAGTACGGCCAGAGCAGTTCTGGGGAACACTGGGACACACACGCAAGAGAAGATACCTGGTATGAGAAATTCCCTCATTATGGTTTCTTCAATTGCTTCGAAAACTCCGTCCAGCTCAGGGAAGTTCCCAAACCATCTGAAATACTGGAAATACAGCAAGTTCAGGAACCTTGA

Predicted protein sequences of Glyma02g00430

Limit To All Plant Sequences

>Glyma02g00430.1   sequence type=predicted peptide   gene model=Glyma02g00430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TPYKYSEVFESHSQLAIPESHALIFMNLGTCAAGAPYRWVHLLPHEGKRRCASVRVRANASVGGGKGDGETASYLDMWKKAVERERKSASFNSIADRVAANTDDNNDDDLEKKTSEFQKLLQVSAEERDRVQRMQVIDRAAAAIAAARQLLQERSAADSSHHEATADERRDESGSGMGVQSEGIRVSESETRGNGVPGPDFWSWTPPVESDVPSDDGSGLQLDTKSSVRPTLPSAVVEKEWTPQFLSIPFESLLSQSERSDTLPPFQSFLEVEEAETTSDPESLSESPSLSLSLEEEQIHGESSFDYAAEAAHALSEANKSSPIGVNPDGSRWWKETGIERRPDGVICRWTMTRGVSADKAIEWQEKYWEASDDFGYKELGSEKSGRDANGNIWREFWRESLCLENGLMSFEKTADKWGRNVNGNEWQEKWGERYNAAGQTEKWAHKWCSIDPNTPLEPGHAHVWHERWGGKYDGYGGSIKYTDKWAERFVDGGWDKWGDKWDENFDPNANGVKQGESWWEGRHGDRWNRTWGEQHNGSGWIHKYGQSSSGEHWDTHAREDTWYEKFPHYGFFNCFENSVQLREVPKPSEILEIQQVQEP*

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