SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55760 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). | chr3:20700648-20702886 FORWARD LENGTH=578 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| UniRef100_I1JB51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB51_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2R1Z4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1Z4_ORYSJ | SoyBase | E_val: 5.00E-172 | ISS |
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Glyma02g00430 not represented in the dataset |
Glyma02g00430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g001900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00430.1 sequence type=CDS gene model=Glyma02g00430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCCGTATAAATACTCAGAAGTGTTTGAGAGTCACAGTCAGTTAGCCATTCCTGAGTCACACGCTCTGATCTTCATGAATCTAGGAACCTGCGCCGCGGGTGCACCGTACCGTTGGGTGCACCTTCTCCCTCACGAAGGAAAGAGAAGATGTGCGAGTGTGAGAGTGAGAGCGAATGCGAGTGTTGGAGGAGGAAAAGGAGATGGCGAAACGGCGTCGTATTTGGACATGTGGAAGAAGGCGGTGGAGAGAGAGAGGAAGAGCGCGAGCTTCAACTCAATAGCGGACCGCGTGGCGGCAAATACTGATGACAACAACGACGACGATCTGGAGAAGAAGACCAGTGAGTTCCAGAAGCTCCTCCAAGTCTCCGCCGAAGAGCGCGACAGGGTGCAGCGCATGCAGGTCATCGATCGCGCCGCCGCCGCCATCGCCGCCGCCAGGCAACTCCTTCAGGAACGCAGTGCCGCCGATTCCAGCCACCACGAAGCCACCGCCGACGAACGACGTGACGAATCAGGTTCAGGAATGGGAGTGCAGAGTGAGGGTATTCGTGTGTCAGAGTCAGAAACAAGGGGAAATGGTGTGCCTGGCCCTGATTTTTGGTCCTGGACACCCCCTGTGGAGAGTGATGTTCCTTCAGATGATGGCAGTGGGCTGCAGTTAGATACCAAGTCTTCTGTTCGTCCAACCTTGCCCAGTGCGGTTGTGGAGAAGGAGTGGACACCACAATTTCTCTCCATTCCATTTGAGAGTTTACTTTCTCAAAGCGAGCGTAGTGATACTCTTCCACCCTTTCAGTCATTTTTAGAGGTTGAGGAAGCTGAAACTACCTCAGACCCAGAGTCACTTTCTGAATCGCCTTCACTGTCACTTTCCTTGGAAGAGGAACAGATACATGGTGAATCGTCTTTTGATTATGCAGCAGAAGCAGCACATGCCCTCAGTGAGGCAAATAAATCATCACCTATTGGAGTGAATCCGGACGGATCGAGATGGTGGAAAGAGACAGGAATTGAGCGAAGACCTGATGGCGTGATCTGCAGATGGACAATGACCAGAGGTGTTAGTGCTGACAAAGCTATTGAGTGGCAAGAGAAGTACTGGGAAGCTTCTGATGATTTTGGCTATAAGGAACTTGGTTCAGAGAAATCTGGACGTGATGCAAATGGAAATATTTGGCGTGAATTTTGGAGAGAATCCTTGTGTCTGGAAAATGGGCTTATGAGTTTTGAGAAAACTGCAGACAAGTGGGGACGAAATGTTAATGGTAATGAGTGGCAGGAAAAATGGGGGGAGCGCTACAATGCTGCTGGTCAAACAGAAAAATGGGCACACAAGTGGTGCAGTATTGACCCAAACACACCGCTTGAACCTGGACATGCTCATGTTTGGCATGAAAGGTGGGGTGGCAAATACGACGGGTACGGTGGGAGCATAAAATACACCGACAAATGGGCCGAGCGGTTTGTGGATGGTGGATGGGATAAATGGGGTGACAAATGGGATGAAAATTTTGATCCAAATGCTAATGGTGTGAAGCAGGGGGAGAGCTGGTGGGAAGGTAGGCATGGCGACCGCTGGAACCGAACTTGGGGTGAGCAACACAATGGCTCTGGTTGGATTCACAAGTACGGCCAGAGCAGTTCTGGGGAACACTGGGACACACACGCAAGAGAAGATACCTGGTATGAGAAATTCCCTCATTATGGTTTCTTCAATTGCTTCGAAAACTCCGTCCAGCTCAGGGAAGTTCCCAAACCATCTGAAATACTGGAAATACAGCAAGTTCAGGAACCTTGA
>Glyma02g00430.1 sequence type=predicted peptide gene model=Glyma02g00430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TPYKYSEVFESHSQLAIPESHALIFMNLGTCAAGAPYRWVHLLPHEGKRRCASVRVRANASVGGGKGDGETASYLDMWKKAVERERKSASFNSIADRVAANTDDNNDDDLEKKTSEFQKLLQVSAEERDRVQRMQVIDRAAAAIAAARQLLQERSAADSSHHEATADERRDESGSGMGVQSEGIRVSESETRGNGVPGPDFWSWTPPVESDVPSDDGSGLQLDTKSSVRPTLPSAVVEKEWTPQFLSIPFESLLSQSERSDTLPPFQSFLEVEEAETTSDPESLSESPSLSLSLEEEQIHGESSFDYAAEAAHALSEANKSSPIGVNPDGSRWWKETGIERRPDGVICRWTMTRGVSADKAIEWQEKYWEASDDFGYKELGSEKSGRDANGNIWREFWRESLCLENGLMSFEKTADKWGRNVNGNEWQEKWGERYNAAGQTEKWAHKWCSIDPNTPLEPGHAHVWHERWGGKYDGYGGSIKYTDKWAERFVDGGWDKWGDKWDENFDPNANGVKQGESWWEGRHGDRWNRTWGEQHNGSGWIHKYGQSSSGEHWDTHAREDTWYEKFPHYGFFNCFENSVQLREVPKPSEILEIQQVQEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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