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Report for Sequence Feature Glyma02g00400

Feature Type:gene_model
Chromosome:Gm02
Start:203633
stop:205729
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g00400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22970AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370 SoyBaseE_val: 3.00E-110ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04720PFAM Protein of unknown function (DUF506) JGI ISS
UniRef100_I1JB50UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB50_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SIH9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SIH9_ARATH SoyBaseE_val: 2.00E-75ISS

Expression Patterns of Glyma02g00400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00400
ParalogEvidenceComments
Glyma10g00460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g001700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g00400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g00400
>Glyma02g00400.1   sequence type=CDS   gene model=Glyma02g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCGATGAAGGTTCAGCCAATTGCAATTGACATCGATTCCGAGAAGGTGAAGGCGACCACGGCGGCGGTGGTGGTCCGGAACGAGTCGGTGCTGAAGTCGCGCCTGAGAAGGTTGTTCGTCTTTGACCGCCAGTTACCGAAAAACAACAACAAAGATGCCGCAGAATTCGAACCGAGCTCGTTGTGCTTGGCGAAAATGGTGCAGAATTTCATGGAGGAGCAGCCACCGGCGCCACCGAAATGCGGCCGCAACCGCTGCAACTGCTTCAACGCCAATAGCTCCGACGAGGACGATTTCGACCTCTTCGGAGCCGCACCGGCACCGGAATCCTCCAACGCCGACGCCACCGAATCACTCAAGAGCTTGATCCCCTGCGCGAGTGTCGGCGAGCGGAACCTGCTAGCTGAGGTGGCGAGGATCGTTGAGAAAAACGGCAAGTCGATTAAGCGAAAAGACGATTTGAGGAAGGTCGTTGCGGAAGCGCTTTCCTCTCTCGGTTACGATTCTTCTATATGCAAATCGAAGTGGGAGAAAACTTCCTCTTGTCCTGCTGGTGAGTATGAATTCATCGATGCGATTGTGGAAGGAGAAAGGCTGATTGTGGATGTGGATTTTAGATCTGAGTTTGAGATAGCGCGATCGACGGGAACGTACAAGGCGATGCTGCAATCGCTGCCGTTCATCTTCGTCGGAAACTCGGAGAGGCTGACGCAGATCTTGGCGATTGTTTCCGATGCGGCGAAGCAGAGTCTAAAGAAGAAAGGGATGCACGTTCCGCCGTGGAGGAAGCGCGATTACATGCTTGCGAAGTGGCTCTCTCCATCTAGCATTAGGGAGAAGGAGAACAAGCAACCCCCGTCCTCTTCCGTGCAAGCCGCCGCCGTGCCGGAAATGGTGTTTTCTGATAACGCGGCGTCAACGACGACGGAGAGCGATTGCGGTGAGTTGGAGCTGATTTTCGGCGGGGAAATGTCGCCGGAGACTGAGTGCGGCCAGGTAAAGTCGGCGACGACGCCGGCGGTGAAGCCGAAGAGTGTTGAGAGAGGGACTAAGGTTGTGACCGGATTAGCCTCTCTTCTCAAGGACAAACCATAG
Predicted protein sequences of Glyma02g00400
>Glyma02g00400.1   sequence type=predicted peptide   gene model=Glyma02g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPMKVQPIAIDIDSEKVKATTAAVVVRNESVLKSRLRRLFVFDRQLPKNNNKDAAEFEPSSLCLAKMVQNFMEEQPPAPPKCGRNRCNCFNANSSDEDDFDLFGAAPAPESSNADATESLKSLIPCASVGERNLLAEVARIVEKNGKSIKRKDDLRKVVAEALSSLGYDSSICKSKWEKTSSCPAGEYEFIDAIVEGERLIVDVDFRSEFEIARSTGTYKAMLQSLPFIFVGNSERLTQILAIVSDAAKQSLKKKGMHVPPWRKRDYMLAKWLSPSSIREKENKQPPSSSVQAAAVPEMVFSDNAASTTTESDCGELELIFGGEMSPETECGQVKSATTPAVKPKSVERGTKVVTGLASLLKDKP*






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