Glyma02g00390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g00390

Feature Type:	gene_model
Chromosome:	Gm02
Start:	182739
stop:	186998
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22990	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr3:8164015-8166145 FORWARD LENGTH=460	SoyBase	E_val: 0	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR12656	Panther	BRG-1 ASSOCIATED FACTOR 250 (BAF250)	JGI		ISS
UniRef100_I1JB49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB49_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J9I2Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Oxytricha trifallax RepID=J9I2Q4_9SPIT	SoyBase	E_val: 1.00E-08	ISS

Expression Patterns of Glyma02g00390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00390

Paralog	Evidence	Comments
Glyma10g00450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g001600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00390

Limit To All Plant Sequences

>Glyma02g00390.1   sequence type=CDS   gene model=Glyma02g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGAGAGAGCAAGGCAAGTCCGGCGGAGCCGCCGGAGGAGTGGCGGTGACACCGGCGAAGAGAGGCCGTCCCTTCGGCAGCGGTAACAACAGTGCCTCCGCCGCCGCTTCCGCCGCGGATTCGGCGGCTCCGTCAAACCTCCTTGGTCCTTCCCTTCACGTTCACAACTCCTTTGCCGATCAGAACAATAAAAGAATTGTCTTGGCTCTTCAAAGTGGTCTGAAGAGTGAGCTGACCTGGGCGTTGAATATTCTTACGCTACTCTCCTTTAAAGAAAAGGATGACATGCGCAAGGACGCAACTCCCCTTGCAAAAATTCCCGGCTTGCTTGATGCGCTCCTTCAAGTTATAGATGATTGGCGTGATATAGCACTCCCAAAGGAATTAGCCAAGACAACGAGGGTGAGGACGTTAGGTGCAAGTTCTGTTGTAACTGGATTTGGGTGTGAATATCAGGCGCTGGGCTCAACTGGTACTCACCACCGCCCTGGTGTAGGATCTGGCTCTGCTGGTATAGAATCAACGCAGCAGAATGGCGTGACAAAATCTCGTTTTTCGGAGTTGTGGCTTGATGAAGATAGCCTATTTAATTTAGATGATGAAGGGCGAACAGAAAAACAGCAATGTGCTGTTGCTACTTCAAATATCATCAGGAACTTCTCTTTCATGCCAGATAATGAAGTTATAATGGTCCAACATCGCCATTGTTTGGAAACAGCCTTCCAATGCATAGAAGATCATCTTGTAGAGGACGAGGAACTTGTAACAAATGCCCTAGAGACCATTGTTAACTTAGCTCCACTTCTGGATCTTCGAATATTTAGTTCTTCCAAGCCTTCATTTATTAAAATAACAGAAAAACGTGCAGTGCAGGCCATCATGGGGATGTTGGAATCTGCAGTCAAAGCCTGGCATTGTGCTGCTGCTGAATTACTTGGGCGTTTGATCATTAATCCTGACAATGAACCTTTCTTGCTTCCATTTTTTCCACAGATACACAAACGCTTAATTGATCTCATCAGCATGCCAGCTTTAGATGCTCAGGCAGCTGCTATAGGTGCACTCTATAACCTTGCTGAAGTTAATATGGACTGCAGGCTGAAGATTGCTAACGAGAGATGGGCTATTGATCGTTTGCTTAAAGTGATTAAGACACCACATCCGGTTCCAGAAGTTTGCCGGAAATCTGCCATGATATTGGAGAGTCTCGTGTCTGAACCACAAAACAGAAGTTTGCTGCTAGCCTATGAGAATGCTTTTGCAGAGATAGTTTTCACTGATGGAAGATATTCCGATACATTTGCGAGGATATTGTATGAACTAACATCTAGACCAAGTAGCAAAGTCGCAGCGGCTCGTGGCATATGGGGTATGTAA

Predicted protein sequences of Glyma02g00390

Limit To All Plant Sequences

>Glyma02g00390.1   sequence type=predicted peptide   gene model=Glyma02g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKREQGKSGGAAGGVAVTPAKRGRPFGSGNNSASAAASAADSAAPSNLLGPSLHVHNSFADQNNKRIVLALQSGLKSELTWALNILTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELAKTTRVRTLGASSVVTGFGCEYQALGSTGTHHRPGVGSGSAGIESTQQNGVTKSRFSELWLDEDSLFNLDDEGRTEKQQCAVATSNIIRNFSFMPDNEVIMVQHRHCLETAFQCIEDHLVEDEELVTNALETIVNLAPLLDLRIFSSSKPSFIKITEKRAVQAIMGMLESAVKAWHCAAAELLGRLIINPDNEPFLLPFFPQIHKRLIDLISMPALDAQAAAIGALYNLAEVNMDCRLKIANERWAIDRLLKVIKTPHPVPEVCRKSAMILESLVSEPQNRSLLLAYENAFAEIVFTDGRYSDTFARILYELTSRPSSKVAAARGIWGM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain