Glyma02g00371 - SoyBase

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Report for Sequence Feature Glyma02g00371

Feature Type:	gene_model
Chromosome:	Gm02
Start:	156925
stop:	162109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00371

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76390	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:28655914-28658531 FORWARD LENGTH=811	SoyBase	E_val: 1.00E-41	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_B9SMT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9SMT5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337876	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337876 related cluster n=1 Tax=unknown RepID=UPI0002337876	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00371

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g00371 not represented in the dataset	Glyma02g00371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00371 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g001400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00371

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00371

Limit To All Plant Sequences

>Glyma02g00371.1   sequence type=CDS   gene model=Glyma02g00371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGATTGGAACTCATACCCATAGGTACAATATTGACTGTTCTAAACAGCCAGATTGTGAAAACAGCTAATGCAGCAATCGATGTTGTTATTGATAAAGAAAGTTTCAAAGTCCTCTCAAAACACCTGCTTGATATTGCCCCAGTCCTAAAGGAATTGCAGCTTCAGGAATTGAATGAGTCTGAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATATCAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTCTACCTGCTGTTGAGGTGCAGATACATAGTCAAGGAAGTTGAACAAGTCACAAGAGACATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAACAGGTTACAGAGTGAAATGCAAACGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATTAGGGAGCAGAAACTCGATCAGGCTTTTGCAAATGACGTGCTTGAGGAAATAGGAAGGGCAGTTGGGGTGCCGGTGGAGCCTTCAGAGGTAAGCAAAGAGCTAGCCAGCATTAGGAAGGAAATGGAAGAAGCAGCCACCAGGAAAGAAAGAGCTGAGTTTATTTTTTTGGAGCAGATCATTGAGCTACTATCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATACTTTAGAAGGGTTCAGGTAATTGAGAGATATGATTCAAGGGAAAAATATATCCGACCACTTAATTCTTTCCTTTGTCCCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCCGCCATTGAAGCTTGGTTTGATGATGGAAACAGGATTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCCAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTCAATTACTGCTTTGGAATAAGGTCTATCAAGGAAAGCCTATTATCCAATTCTGACTTATTAGTGAAAGAATCTCTGAGCCAAATTCAGGCTCTCATTAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCTATCCTTGGGGAATCTGATTCCACAGATGCCAAGATGAAGATCTTGATTACTTTGAAGGATTCTGTACAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAAACCGATCTGGTTGGAATAAAAGCTTCTGCAAAAAACTCTCTGATCATCCTAGTGCAGTTTCTTACCTTGTTACTCTTCTAAAGGGTCCTGTAAGCAATTCAGCTGGGGTTTCAGAAAAGATTTTGATGGAGCTTTCTGAGATAGACGAGGAAAACATTTCAGCTGCTGCAAAGTTTGGCTGGTACAAACCTCTTACTGATCGCATGATTCAAGGATCGGAGTCTTCACGAATGTCAATGGCGAGAGCCATAGTTAATTTGGAGTTGAAAGATTTGAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACTTCCTTTGCTAGAAATGCTATCTGGCAGCATTGAATCTAAAGAACTGTCACTGTCATCCCTGGTTAAACTAGCAAAATTGCATGCCAATAAGGGGATTATTGCAGCATCTGGAGGTGTGCCTCTTGTTTTAGATTTGATGTTCTTTTGCAGGATGCGGCCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTAGCTTCAGATGATGATGGAATTGATTTCTTAGTTGATGGAAAAGGAAATCAACTTGAGTTAGAAAACATCATCACCAATTTGCTAGCTCTAACTCAGGGTCCAAACTCAGCTCACTACCGAAAGCCTGCATTACGTGCTCTTCTTGGAATTTGTAAGTTTGAGACTGGTTTAGTGAAGAAGGCAGTTCTGGCAGCCAATGGGATATCTCTAATCCTCCCCATTCTTGATGATTCTGACTCAGAAATCAGGGAAACTGCCATAAATATTCTGTTTCTTTTCTCCCAACATGAACCACAAGGACTAGTTGAATACCTCTTCAGTCCAAGAAGACTACAAGCTTTAGTTGGGTTTCTTGAGAATGACGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCCAACCTTCCAAAATCAGAACGGGAACTCACTATGGAGTTGATTGACCTGGGAGGCCTTGATGCAATCCTAAGCATTTTAAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCCCTCTTCAGATTCACAGACCCCACAAATATCGAGTCACAGCATGATTTGGTTAAACGAGGACTATATCCTTTGCTTGTAAATTTTCTCAACACGGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGCTGTTTCCAAATCAACCGGTTGCACTCGTTGGTGGTGTTTTAGACCATCGAAAGTCCCTTTATGTTCAGCACATGGGAGTGTATGCAGTGTGAGTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCCGGCTTGATAAGGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGGAAGACTTTCCCCAAAGGGGAGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAATCAGAAGCTATAGGACTCTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTCGAATACTATGGAACAAGGGCTAGGTTAAGTCTACTTGGTCTGACTGGCATCACTGTATATGGGGATGGCCACCTAAGGAGAAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCGTCATCATCTGCATTCTCTGGAGTTCAGGAGTGA

Predicted protein sequences of Glyma02g00371

Limit To All Plant Sequences

>Glyma02g00371.1   sequence type=predicted peptide   gene model=Glyma02g00371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGLELIPIGTILTVLNSQIVKTANAAIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESEAARVALESLESDIKKANNLVEKYRNRGRFYLLLRCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQTVEFEASQSQLQIVDKLNHGIREQKLDQAFANDVLEEIGRAVGVPVEPSEVSKELASIRKEMEEAATRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFRRVQVIERYDSREKYIRPLNSFLCPITGAVMVDPVSLCTGTTCERSAIEAWFDDGNRIDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFGIRSIKESLLSNSDLLVKESLSQIQALIRENSINKDWISIGELTDIIISILGESDSTDAKMKILITLKDSVQGHARNKEKVVESQGWYHIISCLGSDSRISKEAIDLLYELLQNRSGWNKSFCKKLSDHPSAVSYLVTLLKGPVSNSAGVSEKILMELSEIDEENISAAAKFGWYKPLTDRMIQGSESSRMSMARAIVNLELKDLNLKLLGEQGVILPLLEMLSGSIESKELSLSSLVKLAKLHANKGIIAASGGVPLVLDLMFFCRMRPFITIKCCEILEKLASDDDGIDFLVDGKGNQLELENIITNLLALTQGPNSAHYRKPALRALLGICKFETGLVKKAVLAANGISLILPILDDSDSEIRETAINILFLFSQHEPQGLVEYLFSPRRLQALVGFLENDDNDDVQMAAAGLLANLPKSERELTMELIDLGGLDAILSILKNGTMEAKENALSALFRFTDPTNIESQHDLVKRGLYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTAVSKSTGCTRWWCFRPSKVPLCSAHGSVCSVSSTFCLLEANALPGLIRLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLEILNWGTDSLKSEAIGLLEKVFVSKEMVEYYGTRARLSLLGLTGITVYGDGHLRRKAARVLSLLERYSKSSSSAFSGVQE*

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