SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17560 | AT | Annotation by Michelle Graham. TAIR10: BolA-like family protein | chr5:5788474-5789671 FORWARD LENGTH=177 | SoyBase | E_val: 2.00E-48 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG3348 | KOG | BolA (bacterial stress-induced morphogen)-related protein | JGI | ISS | |
| PTHR12735 | Panther | BOLA-LIKE PROTEIN-RELATED | JGI | ISS | |
| PTHR12735:SF3 | Panther | BOLA-LIKE PROTEIN CGI-143 | JGI | ISS | |
| PF01722 | PFAM | BolA-like protein | JGI | ISS | |
| UniRef100_B9SDE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription regulator, putative n=1 Tax=Ricinus communis RepID=B9SDE8_RICCO | SoyBase | E_val: 3.00E-53 | ISS |
| UniRef100_I1JB41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB41_SOYBN | SoyBase | E_val: 1.00E-110 | ISS |
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Glyma02g00320 not represented in the dataset |
Glyma02g00320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g000900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g00320.2 sequence type=transcript gene model=Glyma02g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAAGAAAAAAAATATCTAAGGTAGGGATTTTGCTAAATCACTATTTACTGTAAATAATTAATTTTAATGAGTCTCCCTACTAAATGAAAAGAATGAGAAATAAAGGTTGGTTTAGAGCAACGGCAGCGCAGGGTTGGGCTATCCATTTGTTTCGAGAATGCGGTCTCTCTCAGCCAACCCTTCCTTACTGCGACAAGCTGTTCCAGTTTTGGTCAAACCCTACAAATCCATTCTCTCTCGAGCATTCCTCTTCAGCTCCCCTGCCTCCACATCTCATTCTCACAATACTCAATTTCTTAGATCCGTCACGTTTTTCTCTCCTACTTCTCTTCGTAATTTTAATTCACGCGCCACCCATCTCAACGATGCTGGCTCTATCGACTCTCCTCTTATACAGTCCATGCAGAACAAGATAAAGGAACAACTCAATGCAGAATCGGTCTCCGTCAAGGATGCTTATGGTGATGGTCGGCATGTTAGAAAAAGAATTTCAAAGCAGAAGATGGAGAAGTACATGGAATTTGGAGGATAGAGGATCATCTGTATCAAAAAAGGGAAAACAGAACAACAAAGAA
>Glyma02g00320.1 sequence type=CDS gene model=Glyma02g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGTCTCTCTCAGCCAACCCTTCCTTACTGCGACAAGCTGTTCCAGTTTTGGTCAAACCCTACAAATCCATTCTCTCTCGAGCATTCCTCTTCAGCTCCCCTGCCTCCACATCTCATTCTCACAATACTCAATTTCTTAGATCCGTCACGTTTTTCTCTCCTACTTCTCTTCGTAATTTTAATTCACGCGCCACCCATCTCAACGATGCTGGCTCTATCGACTCTCCTCTTATACAGTCCATGCAGAACAAGATAAAGGAACAACTCAATGCAGAATCGGTCTCCGTCAAGGATGCTTATGGTGATGGTCGGCATGTTAGCATTGATGTGGTAGCTACTGCCTTTGAGGGACAATCAGCCGTTAATAGGCAAAGGATGGTTTATAAAGCTATATGGGAGGAACTTCAGACTGTAGTTCATGCTGTTGATCAGATGACTACAAGCACTCCTGCTGAAGCAGCCGCAAAGTGA >Glyma02g00320.2 sequence type=CDS gene model=Glyma02g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGTCTCTCTCAGCCAACCCTTCCTTACTGCGACAAGCTGTTCCAGTTTTGGTCAAACCCTACAAATCCATTCTCTCTCGAGCATTCCTCTTCAGCTCCCCTGCCTCCACATCTCATTCTCACAATACTCAATTTCTTAGATCCGTCACGTTTTTCTCTCCTACTTCTCTTCGTAATTTTAATTCACGCGCCACCCATCTCAACGATGCTGGCTCTATCGACTCTCCTCTTATACAGTCCATGCAGAACAAGATAAAGGAACAACTCAATGCAGAATCGGTCTCCGTCAAGGATGCTTATGGTGATGGTCGGCATGTTAGAAAAAGAATTTCAAAGCAGAAGATGGAGAAGTACATGGAATTTGGAGGATAG
>Glyma02g00320.1 sequence type=predicted peptide gene model=Glyma02g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSLSANPSLLRQAVPVLVKPYKSILSRAFLFSSPASTSHSHNTQFLRSVTFFSPTSLRNFNSRATHLNDAGSIDSPLIQSMQNKIKEQLNAESVSVKDAYGDGRHVSIDVVATAFEGQSAVNRQRMVYKAIWEELQTVVHAVDQMTTSTPAEAAAK* >Glyma02g00320.2 sequence type=predicted peptide gene model=Glyma02g00320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSLSANPSLLRQAVPVLVKPYKSILSRAFLFSSPASTSHSHNTQFLRSVTFFSPTSLRNFNSRATHLNDAGSIDSPLIQSMQNKIKEQLNAESVSVKDAYGDGRHVRKRISKQKMEKYMEFGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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