Glyma02g00290 - SoyBase

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Report for Sequence Feature Glyma02g00290

Feature Type:	gene_model
Chromosome:	Gm02
Start:	89316
stop:	90660
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43650	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:17533310-17534758 REVERSE LENGTH=247	SoyBase	E_val: 2.00E-32	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_B9RTE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTE7_RICCO	SoyBase	E_val: 2.00E-41	ISS
UniRef100_UPI0002337874	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337874 related cluster n=1 Tax=unknown RepID=UPI0002337874	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g000800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g00290

Limit To All Plant Sequences

>Glyma02g00290.2   sequence type=transcript   gene model=Glyma02g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTAAATTAATCACAATAATACTACAGGTCATGGATCGCTTTTTTCCTGAGAAAATTCTCGGTGAGATTTTCTGGGATGAACCTTTTTTGGCCACTGATCAAAGTGATTTAGTTCAATATTCCCAGATTAACAAGGCTGAAGCTTCCCCTCCTGCAGCAACTCCAAGCGCTTTTGTTCAATATAGAGACCTACCCAGAAGAATTAATTCTCTAAACGGGTCAAATTCCCAGATCATGAGTAAGAAAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTTGGCCTGTGGAGAGAAATAACGTACAAGAGAATGAGAGAAACCGTAGTTTCAGGCACATGATCAACGAAAGAATGAGAAGACAGAGGCAGAGGCAGTGTTGTTTGGCGCTGCATTCAATATTACCACAAGGAACAAAAACGGATAATAATTCTGTAATTCAAATGGCGGCAAAGGAGATTGTACGGCTACAAGGATGCAGAGAAGAGTTGCAAAGGAAAAATGTTGAGCTTGAAGCAAATCTTGAAGGTGTTGAGAGCAGCAAAGGTAGCGGAAGTAAAGTTCAATATTTGAGAGTTCCACATCCTAAGTCTGGAATTGATTCTATGGTTGAGATCCTCAAATGCTTGAAAGACAAAGGAGTCGATACCAGAAGCATCAAATCAACTTTCTCCCCACAGGAGTTGTTTGCAGTGTTAGAGACAGAAACTGATGAGATGCTGATGTTGAAAGCGCTACTTGGGGAACACATGATGAACTTGATTGGAAGCTTCATTCCGATGCCCGGGAAGGTTCAAATAAAAAGCAAAAGACTATACATTAAGAGTTAGACCAAATTTAGAAATGTCTACCTTGTATTTGTAAATATATACACACCAGATCAATTGACTTTTTTTTATAGTCGTCAAGCTTGTACACGTGTAAAAGTCTTCGGATTTTACCTTATTTGAGATTCACTTAATTCCCTCTCTAATTTCTCACCTGTTAAGTAAATGCATAGATATTAGTTAGTTGACAAGATCAAGTGTATATTCACTTGCTATAATTTTAGTTCCCA

Coding sequences of Glyma02g00290

Limit To All Plant Sequences

>Glyma02g00290.1   sequence type=CDS   gene model=Glyma02g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCTTTTTTCCTGAGAAAATTCTCGGTGAGATTTTCTGGGATGAACCTTTTTTGGCCACTGATCAAAGTGATTTAGTTCAATATTCCCAGATTAACAAGGCTGAAGCTTCCCCTCCTGCAGCAACTCCAAGCGCTTTTGTTCAATATAGAGACCTACCCAGAAGAATTAATTCTCTAAACGGGTCAAATTCCCAGATCATGAGTAAGAAAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTTGGCCTGTGGAGAGAAATAACGTACAAGAGAATGAGAGAAACCGTAGTTTCAGGCACATGATCAACGAAAGAATGAGAAGACAGAGGCAGAGGCAGTGTTGTTTGGCGCTGCATTCAATATTACCACAAGGAACAAAAACGGATAATAATTCTGTAATTCAAATGGCGGCAAAGGAGATTGTACGGCTACAAGGATGCAGAGAAGAGTTGCAAAGGAAAAATGTTGAGCTTGAAGCAAATCTTGAAGGTGTTGAGAGCAGCAAAGGTAGCGGAAGTAAAGTTCAATATTTGAGAGTTCCACATCCTAAGTCTGGAATTGATTCTATGGTTGAGATCCTCAAATGCTTGAAAGACAAAGGAGTCGATACCAGAAGCATCAAATCAACTTTCTCCCCACAGGAGTTGTTTGCAGTGTTAGAGACAGAAACTGATGAGGTTGCAGATGCTGATGTTGAAAGCGCTACTTGGGGAACACATGATGAACTTGATTGGAAGCTTCATTCCGATGCCCGGGAAGGTTCAAATAAAAAGCAAAAGACTATACATTAA

>Glyma02g00290.2   sequence type=CDS   gene model=Glyma02g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCTTTTTTCCTGAGAAAATTCTCGGTGAGATTTTCTGGGATGAACCTTTTTTGGCCACTGATCAAAGTGATTTAGTTCAATATTCCCAGATTAACAAGGCTGAAGCTTCCCCTCCTGCAGCAACTCCAAGCGCTTTTGTTCAATATAGAGACCTACCCAGAAGAATTAATTCTCTAAACGGGTCAAATTCCCAGATCATGAGTAAGAAAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTTGGCCTGTGGAGAGAAATAACGTACAAGAGAATGAGAGAAACCGTAGTTTCAGGCACATGATCAACGAAAGAATGAGAAGACAGAGGCAGAGGCAGTGTTGTTTGGCGCTGCATTCAATATTACCACAAGGAACAAAAACGGATAATAATTCTGTAATTCAAATGGCGGCAAAGGAGATTGTACGGCTACAAGGATGCAGAGAAGAGTTGCAAAGGAAAAATGTTGAGCTTGAAGCAAATCTTGAAGGTGTTGAGAGCAGCAAAGGTAGCGGAAGTAAAGTTCAATATTTGAGAGTTCCACATCCTAAGTCTGGAATTGATTCTATGGTTGAGATCCTCAAATGCTTGAAAGACAAAGGAGTCGATACCAGAAGCATCAAATCAACTTTCTCCCCACAGGAGTTGTTTGCAGTGTTAGAGACAGAAACTGATGAGATGCTGATGTTGAAAGCGCTACTTGGGGAACACATGATGAACTTGATTGGAAGCTTCATTCCGATGCCCGGGAAGGTTCAAATAAAAAGCAAAAGACTATACATTAAGAGTTAG

Predicted protein sequences of Glyma02g00290

Limit To All Plant Sequences

>Glyma02g00290.1   sequence type=predicted peptide   gene model=Glyma02g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRFFPEKILGEIFWDEPFLATDQSDLVQYSQINKAEASPPAATPSAFVQYRDLPRRINSLNGSNSQIMSKKMLAFLRKSWPWPVERNNVQENERNRSFRHMINERMRRQRQRQCCLALHSILPQGTKTDNNSVIQMAAKEIVRLQGCREELQRKNVELEANLEGVESSKGSGSKVQYLRVPHPKSGIDSMVEILKCLKDKGVDTRSIKSTFSPQELFAVLETETDEVADADVESATWGTHDELDWKLHSDAREGSNKKQKTIH*

>Glyma02g00290.2   sequence type=predicted peptide   gene model=Glyma02g00290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRFFPEKILGEIFWDEPFLATDQSDLVQYSQINKAEASPPAATPSAFVQYRDLPRRINSLNGSNSQIMSKKMLAFLRKSWPWPVERNNVQENERNRSFRHMINERMRRQRQRQCCLALHSILPQGTKTDNNSVIQMAAKEIVRLQGCREELQRKNVELEANLEGVESSKGSGSKVQYLRVPHPKSGIDSMVEILKCLKDKGVDTRSIKSTFSPQELFAVLETETDEMLMLKALLGEHMMNLIGSFIPMPGKVQIKSKRLYIKS*

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