Glyma02g00280 - SoyBase

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Report for Sequence Feature Glyma02g00280

Feature Type:	gene_model
Chromosome:	Gm02
Start:	74335
stop:	78688
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01680	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:252033-255246 FORWARD LENGTH=740	SoyBase	E_val: 2.00E-68	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
UniRef100_E2FKH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Sieve element occlusion a n=1 Tax=Glycine max RepID=E2FKH2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E2FKH2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sieve element occlusion a n=1 Tax=Glycine max RepID=E2FKH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g00280

Paralog	Evidence	Comments
Glyma10g00260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g00280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g000700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00280

Limit To All Plant Sequences

>Glyma02g00280.1   sequence type=CDS   gene model=Glyma02g00280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTAGTGACTTCACTTTCTCCTGCGACCCCTTCTTCGGTTCAAACCAACACTTTGAACCCATTGGGTTGGACTGATGATCAGATCCTGGAGAAGGTTTACATTACCCACGTCCACACCGCTGAAAGGTACGATGTGGAATCGCTTTTCAACGTTACTACAAACATCATCAAGCGTGCTACTGCACTTGCTGACAGTGTTGCTGTTAAGACTGGCACACCCGTTGGTCTTATTGAAGACAAGGTTCCTTTGTCCACTTTCGACCCACCGTTCCTTAAACTTAAGCATATTGCTTCTCAGATGATGAACACACCTCACGGTGAGCATCACGCACACAACACAGCAATGTCGATCCTCGACCAGCTGAGAACCTACACATGGGACGGAAAAGCGATAATGGGTCTGGCGGCTTTGGCTTTGGAGTATGGAAACTTCTGGCACCTGGTCCAGACTCCGACAGGAGACCATCTGGGAAGATCATTGGCACAGATGAGCCGAGTTCACATCGTGGAGAGGAACAGGCAAGCCGTGGCTGACTACAACAGCTTGGTTAAGAACTTGCTCATCGCGGTTGAGTGCATCACCGAGTTGGAGAGGCTTTCCACCAAAGGTTATGACTTGAAGGACGTCCCAGCCTTGGCAGAAGCCATGCAAGAGACCCCTGTTGCTGTCTACTGGGCCATCGTCACCACTGTTGTCTGTGCTAATCATTTTGATTTCCTCCTTGGTGAATCGGACTCTAGATACGAAATAGCAAATTTTGACGACAAGCTTGCTGCTGTTATCAGCAAGTTAAAGGCGAATCTGACCAGGAGCAGAAAGAAAATAGGTGACCTAGAAGACTACTGGAGGCGTAAGAAGCTGCTTCAAACTCCGACAGAAATCGTAGAGGTTCTCAAGGTTCTGATCTACCACAACGAAGTTCACGACCCCCATGTCTACGATGGCATCACCAGACAAATGGTTAGCATCGAAGTGTTCAGGAAGAAGCACGTGTTACTCTTCATTTCGGGGCTTGACAGTATCAGAGACGAGGTTCGGCTTCTGCAATCAATCTACGAGGGATTGCAGGAAGATCCAAGGGAAGTGAAGGGATACAGAAAAGAGGACTTCAGGATTCTGTGGGTCCCAGTTGTGGATGAGTGGAATCTTCTGCACAGGGCCGAGTATGATAACCTGAAGCTTGAAATGCCGTGGTATGTGGCGGAATACTTCTACCCCTTGGCCGGAATAAGGCTCATAAGGGAGGACTTGAATTACAAGAACAAACCCATCATCCCTGTGCTCAACCCTCAAGGAAGAGTGGTCAACTACAATGCCATGCACATGATTTTCGTCTGGGGCATCGATGCATTCCCTTTCAGACCCTCTGATGATGATGTCCTCACCCAGAAATGGAATTGGTTCTGGGCAGAAATGAAGAAAGTCAATCCCAAGCTACAAGACCTCATCAAAGCGGACAGTTTCATCTTCATCTATGGAGGCAGTGACAAGAAGTGGCTGCAAGATTTCACTCAGACAGTGGAAAAAATCAAAAGGCATGAGATAATCAAGAGGGCAGACGCGGTGATAGAGCACTATCCATTCGGAAGGGAAGATCACAGGATCGTTCCTCGCTTCTGGATTGGCATAGAGAGCTTGTTCGCGAACATGATTCAGAAGACACAAAAGGACCCTACCATTGAAGAAATAAAGAGCTTGCTCTGCCTCAAACAGCAACAACCCGGGTGGGTTCTTCTCAGCAAAGGATCGAACGTGAAGCTGTTGGGGGGTGGGGACCCAATGCTGGCCACTGCAGCTGATTTCGAGATATGGAAGGAAAAGGTGCTGGAGAAAGCAGGGTTTGACGTGGCTTTCAAGGAATACTATGAGCAGAAGCGTCGCAACTACCCTCAGGAATGCTCGCACATGCAGTTGGCTAACTACCCTGCTGATATTCTTCACCCAATTAACTGCCCTGATGCTGCTTGTGGCAGATCCATGGAGATAGCTTCTGTCAGTTACAAGTGCTGCCACGGTCAAACAGCTCATCACAAGGCTGAAGTTCCAGAGAGTGGCGATGTCATGATTGAGAAGAAGCTCTACGCTTCTTAA

Predicted protein sequences of Glyma02g00280

Limit To All Plant Sequences

>Glyma02g00280.1   sequence type=predicted peptide   gene model=Glyma02g00280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVTSLSPATPSSVQTNTLNPLGWTDDQILEKVYITHVHTAERYDVESLFNVTTNIIKRATALADSVAVKTGTPVGLIEDKVPLSTFDPPFLKLKHIASQMMNTPHGEHHAHNTAMSILDQLRTYTWDGKAIMGLAALALEYGNFWHLVQTPTGDHLGRSLAQMSRVHIVERNRQAVADYNSLVKNLLIAVECITELERLSTKGYDLKDVPALAEAMQETPVAVYWAIVTTVVCANHFDFLLGESDSRYEIANFDDKLAAVISKLKANLTRSRKKIGDLEDYWRRKKLLQTPTEIVEVLKVLIYHNEVHDPHVYDGITRQMVSIEVFRKKHVLLFISGLDSIRDEVRLLQSIYEGLQEDPREVKGYRKEDFRILWVPVVDEWNLLHRAEYDNLKLEMPWYVAEYFYPLAGIRLIREDLNYKNKPIIPVLNPQGRVVNYNAMHMIFVWGIDAFPFRPSDDDVLTQKWNWFWAEMKKVNPKLQDLIKADSFIFIYGGSDKKWLQDFTQTVEKIKRHEIIKRADAVIEHYPFGREDHRIVPRFWIGIESLFANMIQKTQKDPTIEEIKSLLCLKQQQPGWVLLSKGSNVKLLGGGDPMLATAADFEIWKEKVLEKAGFDVAFKEYYEQKRRNYPQECSHMQLANYPADILHPINCPDAACGRSMEIASVSYKCCHGQTAHHKAEVPESGDVMIEKKLYAS*

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