Glyma02g00250 - SoyBase

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Report for Sequence Feature Glyma02g00250

Feature Type:	gene_model
Chromosome:	Gm02
Start:	40007
stop:	44302
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g00250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23770	AT	Annotation by Michelle Graham. TAIR10: protein kinase family protein / peptidoglycan-binding LysM domain-containing protein \| chr2:10120242-10122080 REVERSE LENGTH=612	SoyBase	E_val: 1.00E-81	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0071219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0071323	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to chitin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008061	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitin binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF591	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF01476	PFAM	LysM domain	JGI		ISS
UniRef100_G7JWJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JWJ0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JB35	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB35_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g00250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g00250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g000400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g00250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g00250

Limit To All Plant Sequences

>Glyma02g00250.1   sequence type=CDS   gene model=Glyma02g00250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACAAGTTCCCTCAAAACAATGCATCAGTTCTTCTCTGCTGTCTTCCTCTTCCTCCTCCTTCCACTTTGCAGCAACGCTCAAACAGCACGACAAGCGAACAACACGGGCTTCACGTGCAACTTCACACGCACGTGCACGTCCTACGCCTTCTACCGGGCCACCGCCCCCAACTTCACCGACCTGGCCTCCATCGGCGACCTCTTCTCGGTGAGCCGCCTCATGATATCAACCCCATCCAACATCTCCTCTTCTTCCCTCAACACCCCTTTACTCCCAAATACACCCCTCTTCGTCCCCTTAACCTGCTCCTGCAACCCCGTCAACGCCTCCTTCGGCTCCCTCTCCTACGCCAACATCTCCTACACCATCAACCCCGGCGACACCTTCTTCTTAGTCTCCACCATCAAGTTCCAGAACCTCACCACTTTCCCCTCCGTTGAAGTCGTCAACCCCACCCTCCTCGCCACCAACCTCTCCATCGGCCAGGACACCATCTTCCCCATCTTCTGCAAATGCCCCCCCAACAGCCAAGGAACAAATTACATGATCTCCTACGTCGTCCAACCCGAGGATAACATGTCGTCAATAGCTTCAACTTTCGGTGCTGAAGAACAGTCCATCATTGACGCCAACGGCGGTGAGACAACTCTACATGACTATGACACCATTTTCGTGCCCGTGGCGCGGCTGCCGGCTCTGTCGCAGCCCGCGGTGGTTCCTCACGCGCCGCCGCCAGTAATTGGGAGCAATAATGATGATAGGACAGGGACTGTTAGAGGGTTGGGGGTTGGATTGGGGATTGTGGGGTTGTTGTTGATTTTGGTGAGTGGGGTTTGGGTGTACAGAGAGGTTGTTGTGATGAAGGGAGTGGTGAGAGATGATGAGGAGAAGAATGTGTATTTGGGAGGGAAAGCGGAGGGTAAGAATTTGGATGTCAAGTTGATGGCTAATGTGTCTGATTGTTTGGATAAGTATAGGGTTTTTGGGATTGATGAGCTGGTGGAGGCCACTGATGGGTTTGATCAGAGTTGCTTGATTCAGGGGTCGGTGTACAAAGGCGAAATTGATGGGCATGTCTTTGCCATCAAGAAGATGAAGTGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTAGTGAAGTTGGAGGGATTTTGCATAGACCCAGAAGAAGCAAATTGCTATCTAGTCTATGAATATGTAGAGAATGGATCTCTATACTCATGGCTGCATGAGGGCAAAAAAGAAAAGTTGAGCTGGAAAATAAGGCTAAGAATAGCCATTGACATTGCCAATGGTCTCCAATACATCCACGAGCACACAAGGCCACGGGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTCTTGGACTCCAACATGAGAGCCAAAATTGCCAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATTACCATGCACATTGTGGGAACACAGGGCTATATTGCCCCTGAATATCTTGCTGATGGTGTGGTCTCTACAAAGATGGATGTGTTCGCATTTGGGGTTGTGTTGCTTGAATTAATTTCTGGGAAGGAAGTCATTAACGAGGAGGGAAATCTCTTGTGGGCAAGTGCCATCAAAACCTTTGAAGTGGACAATGAGCAAGAGAAGACAAGGAGGCTGAAGGAATGGTTGGACAAGGATATTTTAAGGGAGACATTCTCAATGGAAAGTTTGATGGGTGCTCTCACCGTTGCAATTGCTTGCTTGCATAGAGACCCGTCTAAGAGGCCCAGCATAATGGATATCGTCTATGCACTGAGTAAAAGTGAAGATATGGGCTTTGATATTTCCGATGATGGGATTGGTTCCCCACGGGTGATAGCTAGGTGA

Predicted protein sequences of Glyma02g00250

Limit To All Plant Sequences

>Glyma02g00250.1   sequence type=predicted peptide   gene model=Glyma02g00250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTSSLKTMHQFFSAVFLFLLLPLCSNAQTARQANNTGFTCNFTRTCTSYAFYRATAPNFTDLASIGDLFSVSRLMISTPSNISSSSLNTPLLPNTPLFVPLTCSCNPVNASFGSLSYANISYTINPGDTFFLVSTIKFQNLTTFPSVEVVNPTLLATNLSIGQDTIFPIFCKCPPNSQGTNYMISYVVQPEDNMSSIASTFGAEEQSIIDANGGETTLHDYDTIFVPVARLPALSQPAVVPHAPPPVIGSNNDDRTGTVRGLGVGLGIVGLLLILVSGVWVYREVVVMKGVVRDDEEKNVYLGGKAEGKNLDVKLMANVSDCLDKYRVFGIDELVEATDGFDQSCLIQGSVYKGEIDGHVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEGKKEKLSWKIRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVVLLELISGKEVINEEGNLLWASAIKTFEVDNEQEKTRRLKEWLDKDILRETFSMESLMGALTVAIACLHRDPSKRPSIMDIVYALSKSEDMGFDISDDGIGSPRVIAR*

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