Glyma01g45760 - SoyBase

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Report for Sequence Feature Glyma01g45760

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55899358
stop:	55908766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g45760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76700	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr1:28780619-28783022 REVERSE LENGTH=398	SoyBase	E_val: 8.00E-102	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0691	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9R8X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ, putative n=1 Tax=Ricinus communis RepID=B9R8X2_RICCO	SoyBase	E_val: 1.00E-109	ISS
UniRef100_I1JB19	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB19_SOYBN	SoyBase	E_val: 6.00E-121	ISS

Expression Patterns of Glyma01g45760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g45760 not represented in the dataset	Glyma01g45760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g45760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g245700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g45760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g45760

Limit To All Plant Sequences

>Glyma01g45760.2   sequence type=transcript   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAATTCCTATTTTGATTAGAAGCGTGAGGGCAAAAAGTCGGAACCACCGGAGAGGAGGGCTTCACACAGAGAATTACGCGGTTGCAGCAGTCAACGCCCGGGATTCCCACGTCCATACCAACCACAACAGGCGGAGAGAGAGTTTAGGCCTTAGTGAGAAGGATAACGCCATTTGGTTTTGGCTTGGAATACGTCATCCACTATCAATCAACTGGGCTTTGAAATGGTGAAGGAGACCGAATACTATGACGTGCTGGGTGTCAGCCCTACGGCATCCGAAGCCGAGATTAAGAAAGCTTATTACATTAAGGCACGGCAAGTGCATCCAGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTAGGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGACAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATATATAGGTCAGTTAGCCATGGCATCAATGGCTTCAATGGACATCTTTACTGAAGGAGAACAATTTGATAGTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATACTGAAAAATAGACTCAACCAATATGTTCAAGGAAACAAAGAGGGTTTTGTTAATGATGCAGAAGCTGAAGTAGCCCGGCTATCTAATGCAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAGCTAGGGAAGAAAGCAATTTATTTGGGTGTGCCTTTTATTGCTGAGTGGTTTAGAAACAAAGGGCACTCTATTAAATCTCAAGTTACAGCAGCAACAGGTGAGCAAACTTTGTACTTTTTAGCCTTTCCTGGCTGTCATATGATTTCTTGA

>Glyma01g45760.3   sequence type=transcript   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAATTCCTATTTTGATTAGAAGCGTGAGGGCAAAAAGTCGGAACCACCGGAGAGGAGGGCTTCACACAGAGAATTACGCGGTTGCAGCAGTCAACGCCCGGGATTCCCACGTCCATACCAACCACAACAGGCGGAGAGAGAGTTTAGGCCTTAGTGAGAAGGATAACGCCATTTGGTTTTGGCTTGGAATACGTCATCCACTATCAATCAACTGGGCTTTGAAATGGTGAAGGAGACCGAATACTATGACGTGCTGGGTGTCAGCCCTACGGCATCCGAAGCCGAGATTAAGAAAGCTTATTACATTAAGGCACGGCAAGTGCATCCAGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTAGGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGACAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATATATAGGTCAGTTAGCCATGGCATCAATGGCTTCAATGGACATCTTTACTGAAGGAGAACAATTTGATAGTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATACTGAAAAATAGACTCAACCAATATGTTCAAGGAAACAAAGAGGGTTTTGTTAATGATGCAGAAGCTGAAGTAGCCCGGCTATCTAATGCAGGTACTGTTCCCTAAGAATAATTCCAGACATGTGAGGAACATGTAGGACAAATGTGTTATGTAGCTGCAAAATTACATTATCAGAATACATAGTTACATCTCATTTTGATGCTTTTTTGGTTACAAATCAATCTGTGGTTGTAAAAAGTCCTTCAAATTAATATTTCTTGTTTATAAAATCATGATATGTTTAAAAAGATTGACTTTACATGACATGGAAAAAACATTTGCCTAATATTTGAATATCAACCTAACTCTCCTTAGCAGGATTGTAACTGAGGTACTTTTGCTGAATTAAGTTGTTGTCATACTTGTCATTATACAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAGCTAGGGAAGAAAGCAATTTATTTGGGTGTGCCTTTTATTGCTGAGTGGTTTAGAAACAAAGGGCACTCTATTAAATCTCAAGTTACAGCAGCAACAGGTGAGCAAACTTTGTACTTTTTAGCCTTTCCTGGCTGTCATATGATTTCTTGATGCCAATCATGTGATTAACTTCATATCATGTCTTAATATACTATTTTACTTTCATTTTCCACCTTGGGTGTTTCTTGAGGCTTGGTTGGATTGAATTGACCTTGCCCATAAAGGCTTTGGTAAAACAGTGAACCAGACTTTTGTGGCAAAGTACAGTTCATGTGAAAAAAAAGAAAAACAGTTTTTCTGAATGTGCTTGAGTGAGTTTTACCACTCAGCTGAATGATCTATTTATATTTATGAGGATTACAATTTACAAAGATAATCAATGCCAACTACAATTTAAAAGGAGCAATTAAGTTATCACAACTTCCTAAGATACGTTGAGCCTAGCTATACAAAGTACCTAGGCTACTTGGAAAGTAGAAGAACCATTGTAGTTGAAATCAAGATCTTACTCTGGAACAGGATGGGGAATTAGGATCGTAAATCGAAAG

Coding sequences of Glyma01g45760

Limit To All Plant Sequences

>Glyma01g45760.1   sequence type=CDS   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGAGACCGAATACTATGACGTGCTGGGTGTCAGCCCTACGGCATCCGAAGCCGAGATTAAGAAAGCTTATTACATTAAGGCACGGCAAGTGCATCCAGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTAGGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGACAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATATATAGGTCAGTTAGCCATGGCATCAATGGCTTCAATGGACATCTTTACTGAAGGAGAACAATTTGATAGTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATACTGAAAAATAGACTCAACCAATATGTTCAAGGAAACAAAGAGGGTTTTGTTAATGATGCAGAAGCTGAAGTAGCCCGGCTATCTAATGCAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAGCTAGGGAAGAAAGCAATTTATTTGGGTGTGCCTTTTATTGCTGAGTGGTTTAGAAACAAAGGGCACTCTATTAAATCTCAAGTTACAGCAGCAACAGGTGAGCAAACTTTGTACTTTTTAGCCTTTCCTGGCTGTCATATGATTTCTTGA

>Glyma01g45760.2   sequence type=CDS   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGAGACCGAATACTATGACGTGCTGGGTGTCAGCCCTACGGCATCCGAAGCCGAGATTAAGAAAGCTTATTACATTAAGGCACGGCAAGTGCATCCAGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTAGGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGACAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATATATAGGTCAGTTAGCCATGGCATCAATGGCTTCAATGGACATCTTTACTGAAGGAGAACAATTTGATAGTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATACTGAAAAATAGACTCAACCAATATGTTCAAGGAAACAAAGAGGGTTTTGTTAATGATGCAGAAGCTGAAGTAGCCCGGCTATCTAATGCAGCTTATGGGGTTGATATGTTGAATACCATTGGCTACATATACGCAAGGCAGGCAGCAAAAGAGCTAGGGAAGAAAGCAATTTATTTGGGTGTGCCTTTTATTGCTGAGTGGTTTAGAAACAAAGGGCACTCTATTAAATCTCAAGTTACAGCAGCAACAGGTGAGCAAACTTTGTACTTTTTAGCCTTTCCTGGCTGTCATATGATTTCTTGA

>Glyma01g45760.3   sequence type=CDS   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGAGACCGAATACTATGACGTGCTGGGTGTCAGCCCTACGGCATCCGAAGCCGAGATTAAGAAAGCTTATTACATTAAGGCACGGCAAGTGCATCCAGATAAAAACCCAAATGACCCTCTTGCTGCACAAAATTTTCAGGTTTTAGGTGAGGCTTACCAAGTTCTGAGTGACCCAGCTCAAAGACAAGCTTATGATGCTCATGGAAAATCAGGAATTTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGAGGAATATATAGGTCAGTTAGCCATGGCATCAATGGCTTCAATGGACATCTTTACTGAAGGAGAACAATTTGATAGTAAAAAGTTGCAAGAGAAAATGAGGGTTGTTCAGAAGGAGAGAGAAGAAAAGCTTGCAGAGATACTGAAAAATAGACTCAACCAATATGTTCAAGGAAACAAAGAGGGTTTTGTTAATGATGCAGAAGCTGAAGTAGCCCGGCTATCTAATGCAGGTACTGTTCCCTAA

Predicted protein sequences of Glyma01g45760

Limit To All Plant Sequences

>Glyma01g45760.1   sequence type=predicted peptide   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKETEYYDVLGVSPTASEAEIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAHGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASMDIFTEGEQFDSKKLQEKMRVVQKEREEKLAEILKNRLNQYVQGNKEGFVNDAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHSIKSQVTAATGEQTLYFLAFPGCHMIS*

>Glyma01g45760.2   sequence type=predicted peptide   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKETEYYDVLGVSPTASEAEIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAHGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASMDIFTEGEQFDSKKLQEKMRVVQKEREEKLAEILKNRLNQYVQGNKEGFVNDAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHSIKSQVTAATGEQTLYFLAFPGCHMIS*

>Glyma01g45760.3   sequence type=predicted peptide   gene model=Glyma01g45760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKETEYYDVLGVSPTASEAEIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAHGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASMDIFTEGEQFDSKKLQEKMRVVQKEREEKLAEILKNRLNQYVQGNKEGFVNDAEAEVARLSNAGTVP*

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