SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19320 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr3:6696395-6698073 REVERSE LENGTH=493 | SoyBase | E_val: 6.00E-117 | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF937 | Panther | JGI | ISS | ||
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_A7Y7E3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat-like protein n=1 Tax=Stylosanthes hamata RepID=A7Y7E3_STYHA | SoyBase | E_val: 2.00E-121 | ISS |
| UniRef100_I1JB07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JB07_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g45570 not represented in the dataset |
Glyma01g45570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g00240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g244600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g45570.2 sequence type=CDS gene model=Glyma01g45570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATATATATAGCACAGGACTTCAACACCGTGTAGCCAGAGAGAAGTTAAAGATGGGCATCACGTACATGTGCGCTTTAATATTATTGTCATTATTGCTTCATTCATTTATGTTCATTGCGGCAGATCAACGGGTGGCCGGATTGGAAACTATCATAGCAAGTGGCCACGTGCACGGGGGTAATTTTTATGGCTCTCCTCCACCACCTCCCCCCGAGTGTCACCCACCCCCTCCAATGTGTCCTCCACCTCCACCTCCGCCACCCGTACGGCTGGAGAGAGCTCGCAAAGCGCTTATCAAATTCACTCGTTTGGTGGATGACCCAAATGGATATACGAGTAACTGGAAGGAGGGTAGAGACACTTGTGAGTTCAGGGGGGTGCGATGTGCAAAATATCCAGACGGACAGCAAGCAGTTGCGGGATTAGACCTGAATGGAGCTGGCCTCTCTGGAAAAAAATGTACAGCGCTCATGCTCACCGGCATCTTGGACAGCATACCCGAGCTCACTTTCTTCCACGTCAACTCCAACAACTTCAGCGGTGCCATCCCAACCGACATCACCAAGTACAAATTTTTCTTCGAGCTAGATCTCAGTAACAACAAACTGGAGGGTGAGTTCCCGAAGGAAGTGCTCCAGCCCAAGCCCAAGGACCAGCAGCTGGTGTTCCTTGACCTCAGGTTCAACAGTCTCTGCGGCCCAATTCCACCGCAGCTCTTTGACTTGGATCTGGATGTGATTTTCATCAACAACAATAAGTTCAGTGGCCATCTCCCCGATAACTTTGGGTCCACACCGGCCAGGTACCTCACTTTTGCCAACAACCAGCTCACGGGCCCAATCCCGGCAAGCATTGGCAAAGCCTCCAAAACCCTCACCGAAGTCCTCTTCTTGGGCAATCACTTCCAGGGTTGCTTGCCCTACCAAATTGGCTACCTCGATAAGGCTACCGTCTTTGATGTCAGCAAAAACTCCTTAACGGGTCCCATCCCACACTCCTTTGCCTGCCTGCAAAGCATCCAGTACCTCAACTTGGACCGCAACCAGTTTTACGGAGAGGTTCCTGAGATGCTGTGTCTTCTCCCTGGCCTCCGCAACAATGGGAACCTCTCCTTATCCGACAACTATTTCACTCAGGTTGGCCCTGCATGCAGGAACCTTATCAAAACCAATGTGCTGGACGTCAGCTACAATTGCATTCTGGGGCTTCCAAATCAAAGGCCGCACGGACAATGCACAGAATTCTTCTCCAAGATCAAGCCCTGCCCAAATCCAAAGTATCTCCATTACGTCCCTTGTAAAGGATACTACCCGCACACCCACCCCGCCGCCACTGCCACTCCTCCGCTCACTTACAACTCTCTCAACCCCCATCATCTTCATCGCTAG
>Glyma01g45570.2 sequence type=predicted peptide gene model=Glyma01g45570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYIYSTGLQHRVAREKLKMGITYMCALILLSLLLHSFMFIAADQRVAGLETIIASGHVHGGNFYGSPPPPPPECHPPPPMCPPPPPPPPVRLERARKALIKFTRLVDDPNGYTSNWKEGRDTCEFRGVRCAKYPDGQQAVAGLDLNGAGLSGKKCTALMLTGILDSIPELTFFHVNSNNFSGAIPTDITKYKFFFELDLSNNKLEGEFPKEVLQPKPKDQQLVFLDLRFNSLCGPIPPQLFDLDLDVIFINNNKFSGHLPDNFGSTPARYLTFANNQLTGPIPASIGKASKTLTEVLFLGNHFQGCLPYQIGYLDKATVFDVSKNSLTGPIPHSFACLQSIQYLNLDRNQFYGEVPEMLCLLPGLRNNGNLSLSDNYFTQVGPACRNLIKTNVLDVSYNCILGLPNQRPHGQCTEFFSKIKPCPNPKYLHYVPCKGYYPHTHPAATATPPLTYNSLNPHHLHR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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