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Report for Sequence Feature Glyma01g45510

Feature Type:gene_model
Chromosome:Gm01
Start:55748736
stop:55749388
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g45510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15220AT Annotation by Michelle Graham. TAIR10: Plant basic secretory protein (BSP) family protein | chr2:6608689-6609366 FORWARD LENGTH=225 SoyBaseE_val: 3.00E-54ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
PF04450PFAM Plant Basic Secretory Protein JGI ISS
UniRef100_I1JB01UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JB01_SOYBN SoyBaseE_val: 5.00E-114ISS
UniRef100_Q9XIY9UniRef Annotation by Michelle Graham. Most informative UniRef hit: NtPRp27 n=1 Tax=Nicotiana tabacum RepID=Q9XIY9_TOBAC SoyBaseE_val: 8.00E-56ISS

Expression Patterns of Glyma01g45510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g45510 not represented in the dataset
Glyma01g45510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g45510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g244100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g45510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g45510
>Glyma01g45510.2   sequence type=CDS   gene model=Glyma01g45510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAATATCTTAAGCCTCTCCTGTGCTTGGTACTAACTCTAGCTGTTGAATATGTTTTGTCAAACAATGCTGGATCCAGCACTGGTGGCAAGATGTTTGAGAAACAAGTTGGTGCCGATTATGCGAAGCAAACACTGGACTCTGCCGCGGACTTCACACTGAAGCTCTTTCACCAGAGCACTGTAGCTGACAGGAAGAATGTCCAACAAGTGAACCTGATTGTAGAAAACATGGATGGACTTCACTTATATGTTTCACAACAAATCGCATATTGTAGCAATGACGAGATTCATGAAAGTTCGAGTTTCATCGAACGGTTTCCCAGAGATGTAGAAAAGGAGATTACTGGGATACTCTATCAACGACTCATTGAAGGCATTGCCGATTATGTGAGGTTGAAAGCTGGCTATGCAGCAGACTACTGGGGTCAGCCAGGGCATGGTGGTGATTGGAACCAAGGATACGATGTCACTGCTCGCTTCCTAGACTATTGCAATGGTATCAAAAATGGCTTTGTTGCCGATTTAAACAGCATGATGAAGTCCCAATTCTCACTTAAATAG
Predicted protein sequences of Glyma01g45510
>Glyma01g45510.2   sequence type=predicted peptide   gene model=Glyma01g45510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEYLKPLLCLVLTLAVEYVLSNNAGSSTGGKMFEKQVGADYAKQTLDSAADFTLKLFHQSTVADRKNVQQVNLIVENMDGLHLYVSQQIAYCSNDEIHESSSFIERFPRDVEKEITGILYQRLIEGIADYVRLKAGYAADYWGQPGHGGDWNQGYDVTARFLDYCNGIKNGFVADLNSMMKSQFSLK*






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