SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44750 | AT | Annotation by Michelle Graham. TAIR10: DNA-directed DNA polymerases | chr5:18052669-18059581 FORWARD LENGTH=1101 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006974 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG2093 | KOG | Translesion DNA polymerase - REV1 deoxycytidyl transferase | JGI | ISS | |
| PTHR11076 | Panther | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER | JGI | ISS | |
| PTHR11076:SF13 | Panther | REV1 | JGI | ISS | |
| PF00533 | PFAM | BRCA1 C Terminus (BRCT) domain | JGI | ISS | |
| PF00817 | PFAM | impB/mucB/samB family | JGI | ISS | |
| PF11799 | PFAM | impB/mucB/samB family C-terminal | JGI | ISS | |
| UniRef100_B9RY76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ricinus communis RepID=B9RY76_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336EB8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336EB8 related cluster n=1 Tax=unknown RepID=UPI0002336EB8 | SoyBase | E_val: 0 | ISS |
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Glyma01g45490 not represented in the dataset |
Glyma01g45490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g243900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g45490.1 sequence type=CDS gene model=Glyma01g45490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTAGACTCGTCTCGCTCTGGTAATTCTAAACGAAGTTTCTCTAATTCTATATCCTCCAACGATTACATTAAGAAGAAGAAAAAGAAGAAGACAACCCCCAACCAGAAAACCCTAGGCGCTGCTTGGGGCTCAAAGTCTAATTCCCGAAAACCCGCCTTCTCCGATTTTGCCAGTTATATGACAGAGAAGAATCGGAAATTACACAACCAGTTTGAAGCTCAGGCTTCCACCTCATCTTTGACTTTAAGTGCCTCTCTATTCAGTGGAGTTTCAATTTTTGTCGATGGTTTCACGATTCCTTCCAACCAGGAACTGCGGAGCTACATGCTAAAGTATGGCGGAAGATTTGAGAATTATTTCTCTAGACATCGTGTAACACATATCATCTGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCCTTCAGTGCAGGGTTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCTGCTAATAGACTCTTGAGCTGGGTGCCTTATCAACTTGACCAGCTTGCTAATAACCAACCAAAACTGTCAGCCTTCTTCACATTGAAAAGTAGTAAAATGTCAGAGGATGCTTATACAAATGACCTTTGTCAAGTAGTATCAGATATTGAAGATTCATCCATGAGGGTTGGCCGATCAGATTCAGAAGATAGACACTCATCCAAAGTTGGGGATATGAGTGAACTTAGCGGGCAAATTAGTACTGAATCTGATGATACTATACCTGAGAATACTAATGCAATTATGATGGAAGAGCTAACTAGTGTTAGAGAGCATGCAGGAGGAAGCAATGCTGCTACTAAAGATGAGAGAAATGTCAAAGGTGAACTTGAACCCGCTCATCAAGCACCTTCTACATCATTTAGTACTCCATGCTCAGATGAGCTGAATGTAAAAGAATATCCAAATTCTTCAGGCACTAAGCCTTCTAAACAGTGTCATTCTACTCTTGCAGACCCTAATTTTGTGGAAAACTATTTCAAGAGCTCACGACTACATTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTCCCACCTTGTCTACTGGGTTTAACAATGAAAGTGCTAATAATAGTGCCTCTGATATTTCTCATAATTCAGTCATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATCAGGAACCACCCTGAATTGTTGGGCCAGCCTGTAGCTGTATGTCATTCAAATAATTCAAATGGAACTGCTGAGATTTCCTCTGCGAACTACCCAGCTCGTAGTCATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCGCTTTGTCCCCATCTTGTTATCTTTCCATACAACTTTGAAGCTTATGAGGAAGTAGCCGATCAATTTTATAGTATATTGCATCAGCGTTGCAAGAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGCCACAGATTCAGAGGTTGAAGATCCTGAACTCTTAGCTTCATCTATTAGAGAAGAGATCTATAAGACCACTGGATGTACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCGAATGGTCAATATCACATAACTACAGAAAAAGTTGAAGATCATTTATGTCAACTCCCAATTAATGCACTTCCTGGAATAGGGTATGTCTTACAGGAGAAGTTGAAGAAACAGAATGTTCACACGTGTGGACAGTTGCGCATGATTTCCAAGGCTTCATTGCAGAAGGACTATGGTATGAAAACAGGAGAAATGCTGTGGATTTATAGCAGAGGAATTGATAACCGGTTAGTTGGAGGCTTTCAGGAAAGTAAGTCTGTTGGGGCTGATGTAAATTGGGGTGTGAGATTCAAAGATATAAAAGACTGTGAACACTTCCTAATAAACCTTTGCAAGGAGGTCTCGTTACGATTGCAGGGTTGTGGAGTGCAGGGGCGCACTTTCACTCTCAAGATCAAAAAGAGAAGAAAAAATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGAGACTGTGAAAATTTGAGTCACTCAGTAACGATTCCTGTTGCTACTGATAATGTGGAAATACTCCAAAGAATAGTAAAGCAGTTGCTTGGATGTTTTTACATAGATGTGAAGGAGATTCGAGGTATTGGCTTGCATGTTTCCAGGCTTGAAAGTGCAGAAGCTTCTAAACAAGGTACAGTAAAATATACTTTGAAATCATGGCTCACTTCTGGATATGCAAGTATTGAAAATCAGAAATATCCTATGGGTCATGACAAGCAGAACAGGGATAGCACTTGCAGTCGTGCTTGTAGAGATTTGCCAGGGTCTTCAGTAGAAATGGACAATAAAATACCTAATAACCAAGCAAGTACCAACCCAATTTCAACACCCCCTCCTTTATGTAACCTTGATGTGGAAGTTATACGGAATCTTCCCCCGGAAGTATTTTCAGAATTAAATGAAATTTACGGAGGGAAGTTAATTGATTATATTGCTAACAGCAAAAGCACAAGTGAGAATTCTAGCCCTTCAGGCAACTCATTTTTGGAGCAAGCAATAAAAAAGGAAGAGGAACTTTCCTATTCTAAGCCGGTTCCTCAAAACAATCCATTATCAAAAAATAAGGCAAAGCAGAATGAGGCAGGCACAGGTGAAGGTGAAGCAGTACCATATTCAGTGTGTGGACCCTATTTCAAGGTTACTCACCATTCAAGTTTTGAAAAAGATGATTTATTGCCTTCTTCTTTTAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTGAAAGCTGTCATTGTTGAGCAGCTTCCTGCACACAGGAGGGCAGAGATTTGCTCCAATGTTGTTGTGGCCCCTCCTCTTGAAAACCATTCATTGTCAGTAGGCATTGAAATTTCTGAGAATTTTCCTGGATCAAGTTATCATGACAACTTATGGGCCGGGAATCCCCCAAATTGGGTTGGGAAGTTTAAAGTTAGCAGTTGCTTAATGTTAAAGAAACTTGCAGAAATGTATTACAAATCAGGGTTGACTAGCACATTATCCTTAGTTTTGCACCAAATTATATCTGAATTCTATGAGCTAAATCTGGCCCAGCAGTTTTCTGATGAAACTGTTAACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATAGAAAGAGATATTGAAGAGATTTATATTTGTTTTCGGCTTCTGAAAAGGTTTGCAGCTAAGTCCCAGTTTTTCCTACAAGTATATAATAGTGTATGTCCTTACCTTCAGGCAACTGTTGATGACAATTATGGAGGGACTTTGCTTTTATAA
>Glyma01g45490.1 sequence type=predicted peptide gene model=Glyma01g45490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLDSSRSGNSKRSFSNSISSNDYIKKKKKKKTTPNQKTLGAAWGSKSNSRKPAFSDFASYMTEKNRKLHNQFEAQASTSSLTLSASLFSGVSIFVDGFTIPSNQELRSYMLKYGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLANNQPKLSAFFTLKSSKMSEDAYTNDLCQVVSDIEDSSMRVGRSDSEDRHSSKVGDMSELSGQISTESDDTIPENTNAIMMEELTSVREHAGGSNAATKDERNVKGELEPAHQAPSTSFSTPCSDELNVKEYPNSSGTKPSKQCHSTLADPNFVENYFKSSRLHFIGTWRNRYRKRFPTLSTGFNNESANNSASDISHNSVIIHVDMDCFFVSVVIRNHPELLGQPVAVCHSNNSNGTAEISSANYPARSHGIRAGMFVRDAKALCPHLVIFPYNFEAYEEVADQFYSILHQRCKKVQAVSCDEAFLDATDSEVEDPELLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLCQLPINALPGIGYVLQEKLKKQNVHTCGQLRMISKASLQKDYGMKTGEMLWIYSRGIDNRLVGGFQESKSVGADVNWGVRFKDIKDCEHFLINLCKEVSLRLQGCGVQGRTFTLKIKKRRKNADEPAKFMGCGDCENLSHSVTIPVATDNVEILQRIVKQLLGCFYIDVKEIRGIGLHVSRLESAEASKQGTVKYTLKSWLTSGYASIENQKYPMGHDKQNRDSTCSRACRDLPGSSVEMDNKIPNNQASTNPISTPPPLCNLDVEVIRNLPPEVFSELNEIYGGKLIDYIANSKSTSENSSPSGNSFLEQAIKKEEELSYSKPVPQNNPLSKNKAKQNEAGTGEGEAVPYSVCGPYFKVTHHSSFEKDDLLPSSFSQVDGSVFQQLPEDLKAVIVEQLPAHRRAEICSNVVVAPPLENHSLSVGIEISENFPGSSYHDNLWAGNPPNWVGKFKVSSCLMLKKLAEMYYKSGLTSTLSLVLHQIISEFYELNLAQQFSDETVNIMCELLRQYIKVKIERDIEEIYICFRLLKRFAAKSQFFLQVYNSVCPYLQATVDDNYGGTLLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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