SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34260 | AT | Annotation by Michelle Graham. TAIR10: 1,2-alpha-L-fucosidases | chr4:16398130-16401591 FORWARD LENGTH=843 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004560 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-L-fucosidase activity | SoyBase | N/A | ISS |
| GO:0047513 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1,2-alpha-L-fucosidase activity | SoyBase | N/A | ISS |
| PTHR10353 | Panther | GLYCOSIDE HYDROLASES | JGI | ISS | |
| PTHR10353:SF6 | Panther | BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
| UniRef100_A8J657 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-1,2-fucosidase n=1 Tax=Lilium longiflorum RepID=A8J657_LILLO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336EB7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336EB7 related cluster n=1 Tax=unknown RepID=UPI0002336EB7 | SoyBase | E_val: 0 | ISS |
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Glyma01g45470 not represented in the dataset |
Glyma01g45470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g243600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g45470.2 sequence type=transcript gene model=Glyma01g45470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTATATAATCAAGAGTTATTTGGAGATTTTTAATTGTTATTCAATTAATATTTTTTTATCGGATTGATTTATTTTGAAATAAAATAGTATCTTTAGCTATGATTTTATGTCAAAGCCAAAGATTAACTCAAAATCAAAATGCAATAACTTTGAATATTGAATTGAAATTCAACTAGGCAACAAAATCCAAATAGAATTTAATTAGGCATGAGTTTGGGTGGAGAGAAGTGTTGTTTTAGTCTTTGAAGGATGGCGGAAGGGCGAGGGAGTAGGAATTTGAAGATTAGGTTTAGAGAAGGTGGGAAGCACTGGACGGATGCAGTTCCCATTGGGAACGGACGCTTGGGAGCCATGGTCTGCGGCCACGTCCATTCCGAAACCATACACCTCAATGAGGACACGCTCTGGACTGGGACACCCGCAGACTACACTAATTCCAAGGCTCCACCAGCACTTTCTCACGTTAGAAACCTCGTTCACCGACAACACTATCCCCAAGCCACTGCTGCTTCTTCTGCCTTAACAGGAAATCCATCCGAGGCCTACCTACTTCTCGGCGATATCCAATTGGACTTTGATTACTCACATCTCACACCCGGCCTCCAACAACCTTACGAGAGAGAGCTTGACTTGGACACTGCTACTGTCAAAGTCAGATATTCTGTCGGAGATGTTCAATTCACTAGGGAACACTTTGCTTCCTATCCCGATCAACTCATTGTTACTCAAATCTCTTCCAGTAAACCGGCCAAACTTTCATTTACAGTTTCTCTCCTCAGCAAAATCATTAACCAAACTTACGTAAATGCCCCTAATCAGATTATAATGAAGGGATCATGTCCTGGCAAAAGGATCCAACACAATCCCCATGGAATTCAATTCTCCGCAATTCTTGATTTGAAGATTGGTGGCACAGATGGAGTCATCCATATTTTGGACAATAACAAGTTGAAGGTTGAGGCTTCAGATTGGGCTGTTTTACTTCTTGTTGCTTCCTCCTCCTTCAGTGGCCCATTTACCGCTCCTTCAGATTCTAAAAAGGATCCTACTTCTCAATGTTTCACTACATTGAGCTCAATAAGCAATGTATCATATTCTCATCTTTATGCACGCCATTTAAATGACTATCAGGGTCTTTTTCACCGAGTATCTCTGCAGCTTATGAGAAGCACCCGGCCAAATATATCAGAGGACAGGTCTTTGGAATTGAAGAGGCTTACCTCATCTGTAGCTCATTTGTCTCTTGTAGACAGTACTGTAACACAAGCTTCAACTTCAGACAGGGTGAAATCGTTTCAGACTGATGAAGATCCTTCCTTGGTGGAGCTTCTATTTCAGTATGGTCGTTATTTGCTTATTTCTTCTTCACGTCCTGGAACTCAGGTGGCAAACCTACAGGGAATTTGGAACAAAGATCTTGAGCCAGTTTGGGATGGAGCTCCCCACTTGAACATCAATCTTGAAATGAACTATTGGCCTGCTCTTCCTTGCAATCTTAGCGAGTGTCAAGAACCCTTGTTTGATTACATTTCTCTTCTGTCTGTGAACGGCAGTAAAACTGCACATGTGAATTACCAAGCAAATGGTTGGGTGGCACATAGTAAATCAGATATATGGGCGAGAACATCAGCAGGTCAAGGTGATGTTGTGTGGGCCTTGTGGCCAATGGGTGGAGCATGGCTTTGTACTCATCTATGGGAGCACTATGCTTACACAATGGATGAGGATTTCCTCAAATATAAAGCATATCCCTTAATGGAAGGATGCGTGTCATTTCTGTTGAGCTGGCTGATCGAAGACAGTGAAGGATATCTTGAAACTAATCCATCAACTTCCCCTGAACATTATTTTATCGCTCCCAATGGCGAGCCTGCTTGTGTAAGCCAGTCATCCACAATGGATGTAGCAATCATAAACGAAGTCTTCTCCACATTTCTTTCTGCTGCTGAGGTTATAGGGAGAACAAAGGATAACATTGTTGGAGAAGTTCGTAAAGCTCAACCACGGTTACGTCCAATCAACATAGCCCAGGATGGTTCCATTATGGAATGGACAGGTGAAAGATTTCAAGGATCCAGAGGTGCATCACCGGCACCTTTCACATCTATTTGGTCTATTTCCAGGGCATACGATTACTTTTAAGGAAACTCCAGCCCTGATCGAAGCTGCCGAAAAAAGCCTTTATAAACGAGGAGAGGAAGGTCCTGGATGGTCAACCACATGGAAAACTGCTTGTTGGGCACGGCTACAAAACAGTTCTAATGCATATAAGATGATCAAGCACTTGATCAACTTGGTGGATCCAGATCATGAGAGACCATTTCAAGGTGGACTTTACAGCAACCTTTTTGCTGCACACCCACCATTTCAGATCGATGCCAACTTCGGGTTTGCAGCGGCAGTTGCAGAAATGCTTGTTCAGAGTACATTGAGCGATCTTTTCTTACTTCCTGCCCTTCCTTGGGAGAAATGGCCAAATGGCTCCCTGAAAGGCTTAAAGGCTCGTGGAGGAACAACAGTTAACATATACTGGAGAGAAGGGGATCTTCAGGAGGTTGGTATATGGTCCGAAGACCAAACGAGAACAACTCTAAGAAAAAGAATACACTATAGAGGAACCATGGTCACTGCAGACTTAGTGTCTGGCCTTTTTTACAAGTTCAACGGACAGTTGAAGTGCTTGAACACATGCTCTCTTTCAGAAATGCCTTGTTCTTGAATTTCAGTTTTTTTTTCCTTCTTCTATAATACAACTTTGGTCTTCCTATTTAGTTTAATGTGTAATTTTGGTTTTTTATTTTAAAATATACACATTTAGTCCTTTAACTTTAAAAAATTCATAATTTTGGTCCAATTTTCAATTTTGCATA
>Glyma01g45470.1 sequence type=CDS gene model=Glyma01g45470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGGGCGAGGGAGTAGGAATTTGAAGATTAGGTTTAGAGAAGGTGGGAAGCACTGGACGGATGCAGTTCCCATTGGGAACGGACGCTTGGGAGCCATGGTCTGCGGCCACGTCCATTCCGAAACCATACACCTCAATGAGGACACGCTCTGGACTGGGACACCCGCAGACTACACTAATTCCAAGGCTCCACCAGCACTTTCTCACGTTAGAAACCTCGTTCACCGACAACACTATCCCCAAGCCACTGCTGCTTCTTCTGCCTTAACAGGAAATCCATCCGAGGCCTACCTACTTCTCGGCGATATCCAATTGGACTTTGATTACTCACATCTCACACCCGGCCTCCAACAACCTTACGAGAGAGAGCTTGACTTGGACACTGCTACTGTCAAAGTCAGATATTCTGTCGGAGATGTTCAATTCACTAGGGAACACTTTGCTTCCTATCCCGATCAACTCATTGTTACTCAAATCTCTTCCAGTAAACCGGCCAAACTTTCATTTACAGTTTCTCTCCTCAGCAAAATCATTAACCAAACTTACGTAAATGCCCCTAATCAGATTATAATGAAGGGATCATGTCCTGGCAAAAGGATCCAACACAATCCCCATGGAATTCAATTCTCCGCAATTCTTGATTTGAAGATTGGTGGCACAGATGGAGTCATCCATATTTTGGACAATAACAAGTTGAAGGTTGAGGCTTCAGATTGGGCTGTTTTACTTCTTGTTGCTTCCTCCTCCTTCAGTGGCCCATTTACCGCTCCTTCAGATTCTAAAAAGGATCCTACTTCTCAATGTTTCACTACATTGAGCTCAATAAGCAATGTATCATATTCTCATCTTTATGCACGCCATTTAAATGACTATCAGGGTCTTTTTCACCGAGTATCTCTGCAGCTTATGAGAAGCACCCGGCCAAATATATCAGAGGACAGGTCTTTGGAATTGAAGAGGCTTACCTCATCTGTAGCTCATTTGTCTCTTGTAGACAGTACTGTAACACAAGCTTCAACTTCAGACAGGGTGAAATCGTTTCAGACTGATGAAGATCCTTCCTTGGTGGAGCTTCTATTTCAGTATGGTCGTTATTTGCTTATTTCTTCTTCACGTCCTGGAACTCAGGTGGCAAACCTACAGGGAATTTGGAACAAAGATCTTGAGCCAGTTTGGGATGGAGCTCCCCACTTGAACATCAATCTTGAAATGAACTATTGGCCTGCTCTTCCTTGCAATCTTAGCGAGTGTCAAGAACCCTTGTTTGATTACATTTCTCTTCTGTCTGTGAACGGCAGTAAAACTGCACATGTGAATTACCAAGCAAATGGTTGGGTGGCACATAGTAAATCAGATATATGGGCGAGAACATCAGCAGGTCAAGGTGATGTTGTGTGGGCCTTGTGGCCAATGGGTGGAGCATGGCTTTGTACTCATCTATGGGAGCACTATGCTTACACAATGGATGAGGATTTCCTCAAATATAAAGCATATCCCTTAATGGAAGGATGCGTGTCATTTCTGTTGAGCTGGCTGATCGAAGACAGTGAAGGATATCTTGAAACTAATCCATCAACTTCCCCTGAACATTATTTTATCGCTCCCAATGGCGAGCCTGCTTGTGTAAGCCAGTCATCCACAATGGATGTAGCAATCATAAACGAAGTCTTCTCCACATTTCTTTCTGCTGCTGAGGTTATAGGGAGAACAAAGGATAACATTGTTGGAGAAGTTCGTAAAGCTCAACCACGGTTACGTCCAATCAACATAGCCCAGGATGGTTCCATTATGGAATGGGTGAAAGATTTCAAGGATCCAGAGGTGCATCACCGGCACCTTTCACATCTATTTGGTCTATTTCCAGGGCATACGATTACTTTTAAGGAAACTCCAGCCCTGATCGAAGCTGCCGAAAAAAGCCTTTATAAACGAGGAGAGGAAGGTCCTGGATGGTCAACCACATGGAAAACTGCTTGTTGGGCACGGCTACAAAACAGTTCTAATGCATATAAGATGATCAAGCACTTGATCAACTTGGTGGATCCAGATCATGAGAGACCATTTCAAGGTGGACTTTACAGCAACCTTTTTGCTGCACACCCACCATTTCAGATCGATGCCAACTTCGGGTTTGCAGCGGCAGTTGCAGAAATGCTTGTTCAGAGTACATTGAGCGATCTTTTCTTACTTCCTGCCCTTCCTTGGGAGAAATGGCCAAATGGCTCCCTGAAAGGCTTAAAGGCTCGTGGAGGAACAACAGTTAACATATACTGGAGAGAAGGGGATCTTCAGGAGGTTGGTATATGGTCCGAAGACCAAACGAGAACAACTCTAAGAAAAAGAATACACTATAGAGGAACCATGGTCACTGCAGACTTAGTGTCTGGCCTTTTTTACAAGTTCAACGGACAGTTGAAGTGCTTGAACACATGCTCTCTTTCAGAAATGCCTTGTTCTTGA >Glyma01g45470.2 sequence type=CDS gene model=Glyma01g45470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGGGCGAGGGAGTAGGAATTTGAAGATTAGGTTTAGAGAAGGTGGGAAGCACTGGACGGATGCAGTTCCCATTGGGAACGGACGCTTGGGAGCCATGGTCTGCGGCCACGTCCATTCCGAAACCATACACCTCAATGAGGACACGCTCTGGACTGGGACACCCGCAGACTACACTAATTCCAAGGCTCCACCAGCACTTTCTCACGTTAGAAACCTCGTTCACCGACAACACTATCCCCAAGCCACTGCTGCTTCTTCTGCCTTAACAGGAAATCCATCCGAGGCCTACCTACTTCTCGGCGATATCCAATTGGACTTTGATTACTCACATCTCACACCCGGCCTCCAACAACCTTACGAGAGAGAGCTTGACTTGGACACTGCTACTGTCAAAGTCAGATATTCTGTCGGAGATGTTCAATTCACTAGGGAACACTTTGCTTCCTATCCCGATCAACTCATTGTTACTCAAATCTCTTCCAGTAAACCGGCCAAACTTTCATTTACAGTTTCTCTCCTCAGCAAAATCATTAACCAAACTTACGTAAATGCCCCTAATCAGATTATAATGAAGGGATCATGTCCTGGCAAAAGGATCCAACACAATCCCCATGGAATTCAATTCTCCGCAATTCTTGATTTGAAGATTGGTGGCACAGATGGAGTCATCCATATTTTGGACAATAACAAGTTGAAGGTTGAGGCTTCAGATTGGGCTGTTTTACTTCTTGTTGCTTCCTCCTCCTTCAGTGGCCCATTTACCGCTCCTTCAGATTCTAAAAAGGATCCTACTTCTCAATGTTTCACTACATTGAGCTCAATAAGCAATGTATCATATTCTCATCTTTATGCACGCCATTTAAATGACTATCAGGGTCTTTTTCACCGAGTATCTCTGCAGCTTATGAGAAGCACCCGGCCAAATATATCAGAGGACAGGTCTTTGGAATTGAAGAGGCTTACCTCATCTGTAGCTCATTTGTCTCTTGTAGACAGTACTGTAACACAAGCTTCAACTTCAGACAGGGTGAAATCGTTTCAGACTGATGAAGATCCTTCCTTGGTGGAGCTTCTATTTCAGTATGGTCGTTATTTGCTTATTTCTTCTTCACGTCCTGGAACTCAGGTGGCAAACCTACAGGGAATTTGGAACAAAGATCTTGAGCCAGTTTGGGATGGAGCTCCCCACTTGAACATCAATCTTGAAATGAACTATTGGCCTGCTCTTCCTTGCAATCTTAGCGAGTGTCAAGAACCCTTGTTTGATTACATTTCTCTTCTGTCTGTGAACGGCAGTAAAACTGCACATGTGAATTACCAAGCAAATGGTTGGGTGGCACATAGTAAATCAGATATATGGGCGAGAACATCAGCAGGTCAAGGTGATGTTGTGTGGGCCTTGTGGCCAATGGGTGGAGCATGGCTTTGTACTCATCTATGGGAGCACTATGCTTACACAATGGATGAGGATTTCCTCAAATATAAAGCATATCCCTTAATGGAAGGATGCGTGTCATTTCTGTTGAGCTGGCTGATCGAAGACAGTGAAGGATATCTTGAAACTAATCCATCAACTTCCCCTGAACATTATTTTATCGCTCCCAATGGCGAGCCTGCTTGTGTAAGCCAGTCATCCACAATGGATGTAGCAATCATAAACGAAGTCTTCTCCACATTTCTTTCTGCTGCTGAGGTTATAGGGAGAACAAAGGATAACATTGTTGGAGAAGTTCGTAAAGCTCAACCACGGTTACGTCCAATCAACATAGCCCAGGATGGTTCCATTATGGAATGGACAGGTGAAAGATTTCAAGGATCCAGAGGTGCATCACCGGCACCTTTCACATCTATTTGGTCTATTTCCAGGGCATACGATTACTTTTAA
>Glyma01g45470.1 sequence type=predicted peptide gene model=Glyma01g45470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEGRGSRNLKIRFREGGKHWTDAVPIGNGRLGAMVCGHVHSETIHLNEDTLWTGTPADYTNSKAPPALSHVRNLVHRQHYPQATAASSALTGNPSEAYLLLGDIQLDFDYSHLTPGLQQPYERELDLDTATVKVRYSVGDVQFTREHFASYPDQLIVTQISSSKPAKLSFTVSLLSKIINQTYVNAPNQIIMKGSCPGKRIQHNPHGIQFSAILDLKIGGTDGVIHILDNNKLKVEASDWAVLLLVASSSFSGPFTAPSDSKKDPTSQCFTTLSSISNVSYSHLYARHLNDYQGLFHRVSLQLMRSTRPNISEDRSLELKRLTSSVAHLSLVDSTVTQASTSDRVKSFQTDEDPSLVELLFQYGRYLLISSSRPGTQVANLQGIWNKDLEPVWDGAPHLNINLEMNYWPALPCNLSECQEPLFDYISLLSVNGSKTAHVNYQANGWVAHSKSDIWARTSAGQGDVVWALWPMGGAWLCTHLWEHYAYTMDEDFLKYKAYPLMEGCVSFLLSWLIEDSEGYLETNPSTSPEHYFIAPNGEPACVSQSSTMDVAIINEVFSTFLSAAEVIGRTKDNIVGEVRKAQPRLRPINIAQDGSIMEWVKDFKDPEVHHRHLSHLFGLFPGHTITFKETPALIEAAEKSLYKRGEEGPGWSTTWKTACWARLQNSSNAYKMIKHLINLVDPDHERPFQGGLYSNLFAAHPPFQIDANFGFAAAVAEMLVQSTLSDLFLLPALPWEKWPNGSLKGLKARGGTTVNIYWREGDLQEVGIWSEDQTRTTLRKRIHYRGTMVTADLVSGLFYKFNGQLKCLNTCSLSEMPCS* >Glyma01g45470.2 sequence type=predicted peptide gene model=Glyma01g45470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEGRGSRNLKIRFREGGKHWTDAVPIGNGRLGAMVCGHVHSETIHLNEDTLWTGTPADYTNSKAPPALSHVRNLVHRQHYPQATAASSALTGNPSEAYLLLGDIQLDFDYSHLTPGLQQPYERELDLDTATVKVRYSVGDVQFTREHFASYPDQLIVTQISSSKPAKLSFTVSLLSKIINQTYVNAPNQIIMKGSCPGKRIQHNPHGIQFSAILDLKIGGTDGVIHILDNNKLKVEASDWAVLLLVASSSFSGPFTAPSDSKKDPTSQCFTTLSSISNVSYSHLYARHLNDYQGLFHRVSLQLMRSTRPNISEDRSLELKRLTSSVAHLSLVDSTVTQASTSDRVKSFQTDEDPSLVELLFQYGRYLLISSSRPGTQVANLQGIWNKDLEPVWDGAPHLNINLEMNYWPALPCNLSECQEPLFDYISLLSVNGSKTAHVNYQANGWVAHSKSDIWARTSAGQGDVVWALWPMGGAWLCTHLWEHYAYTMDEDFLKYKAYPLMEGCVSFLLSWLIEDSEGYLETNPSTSPEHYFIAPNGEPACVSQSSTMDVAIINEVFSTFLSAAEVIGRTKDNIVGEVRKAQPRLRPINIAQDGSIMEWTGERFQGSRGASPAPFTSIWSISRAYDYF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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