Glyma01g45420 - SoyBase

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Report for Sequence Feature Glyma01g45420

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55701391
stop:	55703571
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g45420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21090	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr5:7164758-7166904 FORWARD LENGTH=218	SoyBase	E_val: 2.00E-57	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7K0X6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Somatic embryogenesis receptor kinase n=1 Tax=Medicago truncatula RepID=G7K0X6_MEDTR	SoyBase	E_val: 9.00E-66	ISS
UniRef100_I1JAZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAZ6_SOYBN	SoyBase	E_val: 9.00E-154	ISS

Expression Patterns of Glyma01g45420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g45420 not represented in the dataset	Glyma01g45420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g45420

Paralog	Evidence	Comments
Glyma11g00330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g45420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g243200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g45420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g45420

Limit To All Plant Sequences

>Glyma01g45420.2   sequence type=transcript   gene model=Glyma01g45420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCAATTTTGTGTGTTGTTTTTGGTTCCAACGTCCTCTCTCCGAAGAGGAAAGGAAGAATGTCTAGTTTTGTTTTCCTATCTCTGTTATTTCTTCTTCTCCAACGTCCTCTCCCATCCCTCTCAAACTCTGAAGGAGACGCTCTTTATGCCTTCAAAACAAGACTTTCTGACCCCAACAACGTACTGGACAGCTGGGACCCATCTCTCGTCACTCCTTGTACCTGGTTTCATGTTACCTGCGACTCCAACAATTACGTCACTCGCTTAGACTTGGGCCGATATAACTTGGGCGGAACTTTGGCCCCAGAACTTGCCCACCTACCCTATCTCCAATACCTGGAGCTCTATGGGAATAACATAACTGGAAACATTCCTCAGGAACTTGGTAACTTGATCAACCTTATTAGTATGGATTTGTCTTATAACCGATTCCAAGGGAACATCCCGAAGTCATTTGGCAACTTGAAGTCTCTTAAATTCCTATGGCTCAACAACAACCAGCTGACAGGATCTATCCCAATAGTTGTCAGCACTCTTAATCTCCAAGTCTTTAATGTCTCTAATAATCGCCTCTCAGAACCACCCGTAGATAAACTTCGTATCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGTACGCAGTCTTACCCTTGCATATGCAAAGAGGCTGTTTCCGAAAACCACTCGTAGATGGCAACTTTAAATCATTCCCGATGGAAAGATTTGAGAATAACAAATTCAGTGGCCCAGAGCTGAAAGGCAGTATCAGAAATGTAGTATGTCATACTTGAATGTCGATGTATCTAAAAAAATAAGAGTTGTGCTGTTCTTACTTGTTATACTTACTTGAAGTACAAGGCTCTAATAATTTATTTCCAATCCCTCCGTGTTATCTTGGATCAATAGA

Coding sequences of Glyma01g45420

Limit To All Plant Sequences

>Glyma01g45420.1   sequence type=CDS   gene model=Glyma01g45420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGTTTTGTTTTCCTATCTCTGTTATTTCTTCTTCTCCAACGTCCTCTCCCATCCCTCTCAAACTCTGAAGGAGACGCTCTTTATGCCTTCAAAACAAGACTTTCTGACCCCAACAACGTACTGGACAGCTGGGACCCATCTCTCGTCACTCCTTGTACCTGGTTTCATGTTACCTGCGACTCCAACAATTACGTCACTCGCTTAGACTTGGGCCGATATAACTTGGGCGGAACTTTGGCCCCAGAACTTGCCCACCTACCCTATCTCCAATACCTGGAGCTCTATGGGAATAACATAACTGGAAACATTCCTCAGGAACTTGGTAACTTGATCAACCTTATTAGTATGGATTTGTCTTATAACCGATTCCAAGGGAACATCCCGAAGTCATTTGGCAACTTGAAGTCTCTTAAATTCCTATGGCTCAACAACAACCAGCTGACAGGATCTATCCCAATAGTTGTCAGCACTCTTAATCTCCAAGTCTTTAATGTCTCTAATAATCGCCTCTCAGAACCACCCGTAGATAAACTTCGTATCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGTACGCAGTCTTACCCTTGCATATGCAAAGAGGCTGTTTCCGAAAACCACTCGTAG

>Glyma01g45420.2   sequence type=CDS   gene model=Glyma01g45420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCAATTTTGTGTGTTGTTTTTGGTTCCAACGTCCTCTCTCCGAAGAGGAAAGGAAGAATGTCTAGTTTTGTTTTCCTATCTCTGTTATTTCTTCTTCTCCAACGTCCTCTCCCATCCCTCTCAAACTCTGAAGGAGACGCTCTTTATGCCTTCAAAACAAGACTTTCTGACCCCAACAACGTACTGGACAGCTGGGACCCATCTCTCGTCACTCCTTGTACCTGGTTTCATGTTACCTGCGACTCCAACAATTACGTCACTCGCTTAGACTTGGGCCGATATAACTTGGGCGGAACTTTGGCCCCAGAACTTGCCCACCTACCCTATCTCCAATACCTGGAGCTCTATGGGAATAACATAACTGGAAACATTCCTCAGGAACTTGGTAACTTGATCAACCTTATTAGTATGGATTTGTCTTATAACCGATTCCAAGGGAACATCCCGAAGTCATTTGGCAACTTGAAGTCTCTTAAATTCCTATGGCTCAACAACAACCAGCTGACAGGATCTATCCCAATAGTTGTCAGCACTCTTAATCTCCAAGTCTTTAATGTCTCTAATAATCGCCTCTCAGAACCACCCGTAGATAAACTTCGTATCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGGTATGGGGGAGGGATGTTGTACGCAGTCTTACCCTTGCATATGCAAAGAGGCTGTTTCCGAAAACCACTCGTAG

Predicted protein sequences of Glyma01g45420

Limit To All Plant Sequences

>Glyma01g45420.1   sequence type=predicted peptide   gene model=Glyma01g45420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFVFLSLLFLLLQRPLPSLSNSEGDALYAFKTRLSDPNNVLDSWDPSLVTPCTWFHVTCDSNNYVTRLDLGRYNLGGTLAPELAHLPYLQYLELYGNNITGNIPQELGNLINLISMDLSYNRFQGNIPKSFGNLKSLKFLWLNNNQLTGSIPIVVSTLNLQVFNVSNNRLSEPPVDKLRIPLPRGSSLCEGMGEGCCTQSYPCICKEAVSENHS*

>Glyma01g45420.2   sequence type=predicted peptide   gene model=Glyma01g45420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FSILCVVFGSNVLSPKRKGRMSSFVFLSLLFLLLQRPLPSLSNSEGDALYAFKTRLSDPNNVLDSWDPSLVTPCTWFHVTCDSNNYVTRLDLGRYNLGGTLAPELAHLPYLQYLELYGNNITGNIPQELGNLINLISMDLSYNRFQGNIPKSFGNLKSLKFLWLNNNQLTGSIPIVVSTLNLQVFNVSNNRLSEPPVDKLRIPLPRGSSLCEGMGEGCCTQSYPCICKEAVSENHS*

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