SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62300 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein S10p/S20e family protein | chr5:25021388-25022235 REVERSE LENGTH=124 | SoyBase | E_val: 7.00E-53 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0015935 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG0900 | KOG | 40S ribosomal protein S20 | JGI | ISS | |
| PTHR11700 | Panther | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER | JGI | ISS | |
| PTHR11700:SF3 | Panther | 30S RIBOSOMAL PROTEIN S10P | JGI | ISS | |
| PF00338 | PFAM | Ribosomal protein S10p/S20e | JGI | ISS | |
| UniRef100_B9R9P7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S20, putative n=1 Tax=Ricinus communis RepID=B9R9P7_RICCO | SoyBase | E_val: 1.00E-51 | ISS |
| UniRef100_C6TFE6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TFE6_SOYBN | SoyBase | E_val: 1.00E-53 | ISS |
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Glyma01g45270 not represented in the dataset |
Glyma01g45270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g00450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g241800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g45270.1 sequence type=CDS gene model=Glyma01g45270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTTCTCTTCATTATAGTGTGCGCCGACCTTGTTCGTGGTGCCAAGGACAAGCGCCTCAGGGTGAAGGGACCTGTTAGGATGCCAACTAAAGTCCTTAACATCACCACCAGGAAGTCCCCATGTGGTGAAGGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTTATTGATCTCCACAGTTCCCCAGATGTGGTTAAGCAAATTACCTCAATCACAATTGAACCTGGTGTCGAGGTCGAGGTCACCATTGCAGATGCTTGA
>Glyma01g45270.1 sequence type=predicted peptide gene model=Glyma01g45270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high LFLFIIVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSPDVVKQITSITIEPGVEVEVTIADA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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