Glyma01g45080 - SoyBase

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Report for Sequence Feature Glyma01g45080

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55499898
stop:	55502424
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g45080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27110	AT	Annotation by Michelle Graham. TAIR10: COBRA-like protein 11 precursor \| chr4:13599236-13601521 REVERSE LENGTH=668	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_G7K110	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COBRA-like protein n=1 Tax=Medicago truncatula RepID=G7K110_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JAV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JAV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g45080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g45080

Paralog	Evidence	Comments
Glyma11g00560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g45080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g240200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g45080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g45080

Limit To All Plant Sequences

>Glyma01g45080.1   sequence type=CDS   gene model=Glyma01g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGTGCATTGCCATATCTATCATTATCATTAGTGCTACTATTCTTGATTTCATCTGGAATTCATGAATGTGAAGGTCAAGATCCTGAGGCTTTGCCTCCAGCAGCAGAAACTTGTACCGGGGTTTTCATTTCCTATGACTTTCTCACCCGAACGAAAGAATTCCCTCGCGTGAAGAAGGCCACGGCACAGCCTTGGGCCTTCAATGCCACCGCAACAGTTCTCAACACAGGAAATGGCATTACCTTTGTTGGATCTTCTGTGCCAGATTTGGATAGCTCCATCAACACAGCTCAAGATTTATCCCAAATTTCAGCCATGATCCAGCTTATTGGCACCCAGTTTAGAGTAAATCCTCCTACAATTCCTATGCCTAAAACCATAAAGTTGGTAACTGATGGTTACAATTGCCCCCAACCAACTACCCGTAAGGATTCCATGCATGCGTGTTGTAAAAAAGACCCTAAATTCAAGGCTACACTGAGGAAGACAAAATTCTTTCCACGGCAAAAAGGGGATCTTACCATATCCTACGACGTGAATCAAGTGTATGAGAATAATTATATGGTAGAGGTGACCATGGAGAATAATCACCTTTTGGGACGGCTGGACCATTGGAACTTGACTTGGGAGTGGACAAGAGGGGAATTTATATACAGTATGAAAGGTGCTTTCACATGTGTGATAGAATACTCAGATTGTATCTATGGTGCTGCAGGACAGTATTATAAGGACATGGATTTCTCTAAAGTCGTTAACTGTCAAAAGAATCCAATAGTCAGTGACTTGCCTCCGGAGAAAGCTAATGACACTGAAATTGGAAAGATACCTCACTGTTGCAAAAACGGAACTATTTTACCTATCCATATGGATCCAAGCAAATCCAAGTCTGTCTTCCAAATGCAAGTGTTCAAAGTTCCACCTGATTTAAACAAAACAGCAATTTACCCTCCAGAGAAATGGAAAATAATGGGCATTCTAAACCCGGATTACAAAAACCCTAGGGGACTTGAAGCAACGGTTATTGCCATTTCAAGTTGGCAAATAGTCTGCAATATCACTAAGCCAACCAAGAGGAGCACTCGCTGTTGTGTTTCTTTCTCTGCTTATTACAATGAGTCCGTAGTACCTTGCAACCCATGTGCCTGTGGTTGTGATGACAATACCAGAAGATGTAATCCGAATTCGCAGGCAATGCTTCTCCCTCCGGAAGCTCTTCTTATACCCTTTGAGAATAGGACAAAAAAGACAGTTGATTGGGCCAAACTAAAGCATTTTAATGTCCCAACAAAATTACCATGTGCTGACAACTGTGGAGTTAGCATAAACTGGCATGTAGTTTGGGACTTCAAAGGTGGGTGGAGTGCCAGAATCACTCTGTTCAATTGGCAGCATACGAATTTTGAGAATTGGTTCACTGCACTGCAATTCAAGAAGAAGGCTTCTCTTGGTTTCGAGATAGTATATTCTTTCAATGGAACATTCCTTCCAACTCTCAACCATACTATTTTCTTGCAAGGAATACAAGGATCGAACTTTTTGATAGGTTTAGACAATGGAACAAACCCAAAGGTGCCCGGAAAATCCCAATCTGTTGTTTCCTTTACTAAGAAGTTTACACCAGGCATCAAAATTGCAAAAGGAGATGGGTTCCCATCAAGGGTCTTTTTTACTGGTGAAGAGTGTTCTATTCCTACCGGATTCCCTGCGAGAAATAGAAACCAACATAATGTAGATTTAGTAAACCTACTATTAGCTTTAGTCTTAGCTTTTACAATGAGTAAAATATTGTACTAA

Predicted protein sequences of Glyma01g45080

Limit To All Plant Sequences

>Glyma01g45080.1   sequence type=predicted peptide   gene model=Glyma01g45080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSALPYLSLSLVLLFLISSGIHECEGQDPEALPPAAETCTGVFISYDFLTRTKEFPRVKKATAQPWAFNATATVLNTGNGITFVGSSVPDLDSSINTAQDLSQISAMIQLIGTQFRVNPPTIPMPKTIKLVTDGYNCPQPTTRKDSMHACCKKDPKFKATLRKTKFFPRQKGDLTISYDVNQVYENNYMVEVTMENNHLLGRLDHWNLTWEWTRGEFIYSMKGAFTCVIEYSDCIYGAAGQYYKDMDFSKVVNCQKNPIVSDLPPEKANDTEIGKIPHCCKNGTILPIHMDPSKSKSVFQMQVFKVPPDLNKTAIYPPEKWKIMGILNPDYKNPRGLEATVIAISSWQIVCNITKPTKRSTRCCVSFSAYYNESVVPCNPCACGCDDNTRRCNPNSQAMLLPPEALLIPFENRTKKTVDWAKLKHFNVPTKLPCADNCGVSINWHVVWDFKGGWSARITLFNWQHTNFENWFTALQFKKKASLGFEIVYSFNGTFLPTLNHTIFLQGIQGSNFLIGLDNGTNPKVPGKSQSVVSFTKKFTPGIKIAKGDGFPSRVFFTGEECSIPTGFPARNRNQHNVDLVNLLLALVLAFTMSKILY*

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