Glyma01g45030 - SoyBase

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Report for Sequence Feature Glyma01g45030

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55453228
stop:	55459327
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g45030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19280	AT	Annotation by Michelle Graham. TAIR10: kinase associated protein phosphatase \| chr5:6488450-6493182 FORWARD LENGTH=581	SoyBase	E_val: 0	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009934	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF10	Panther	PP2C PROTEIN PHOSPHATASE RELATED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
UniRef100_B4Y5J7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase-associated protein phosphatase 2 n=1 Tax=Glycine max RepID=B4Y5J7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B4Y5J7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Kinase-associated protein phosphatase 2 n=1 Tax=Glycine max RepID=B4Y5J7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g45030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g45030

Paralog	Evidence	Comments
Glyma11g00631	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g45030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g239700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g45030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g45030

Limit To All Plant Sequences

>Glyma01g45030.1   sequence type=CDS   gene model=Glyma01g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCGATGCTACAAACCATTCTCACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCGTCATTTTTCTTTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCGCGTTTCCTCTCCTCCATCAAGGGCGAGCTAGAGCGGCCCCTTTTTGGGGACGTAGGTGATGCGTCGTCGTTTAATCGGAGTAATGAATTGCCTCGAGATCATGATCTCGAGGGTGCGTGTTATCCCAGTGAAGCTCATTTCCGCTCTCCTCGAACCCATGGCCAAGTCCTTGTTCACAAGCAAAGGCTTCAAACCCTTAACATGCCCCAGCCACAGGCTGCTGATACTTTGGTTGTCGATGTCATCTCTGATCATTCCTCCTCCGAGGATCTTGATGTTGGTCAAACCCTTAAGCTTCCCTCATCTCATTTAGCTCAAATTCAAAAGCATGCCCTTCCCAATTTTCAAATTGATAGACTTCAGGACTTTGTGCAAAGGGATATCTCTGATCAAAGAAGTTGCCTCACTCTGGAGGTTATCAGTGGCCCTTCTCAGGGACTTCGTTATTCAGTACAGTCAACGAGCCCCTCTCGTCTTCCGCTGACCTTGGGAAGGGTTTCTCCGAGTGATTTGTTGATAAAGGATTCAGAAGTGTCGGGAAAGCATGCCATGATTAAGTGGAATTTGGATAAAATGAAATGGGAGTTGGTGGATATGGGTAGCCTCAACGGAACACTGTTGAATTCTACGCCGATCAACCATCCAGACACTGGAAGTAGGAATTGGGGGGATCCAATGAATCTTACTAATGGAGATATCATAACACTTGGAACAACATCAAAAGTAATGGTTCATATTACATCACAAACTCAGCATCACATTCCCTTTGGAGTTGGTATGGCATCAGATCCGATGGCTTTGCATCGAGGAGGAAAAAGGTTTCCTATGGAAGACGTTTACTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGAATTTTTGGCATTTGTGATGGGCATTGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGATAATTGCTAGTATATTATCAGATTCATTAAAAAGGGAGAGGGTTTTATCACACCGTGATGCTTCAGATATTCTTCGAGAGGCATTTTCTCAAACAGAAGCACACATGAACAACTATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGGTGAAAATTTCTTTGCACAATGTGCTAACGTTGGAGATTCCACCTGTATTATGAGTGTGAATGGGAAACAAATCAAGATGTCAGAAGATCACAAGTTTACGAATTATTCTGAAAGACTCAGAATCGAAGAGACAGGTGAACCATTAAAAGATGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATTCCCGGTTCAGTTCAGAACCTTATATTAGTCAAGTTGTGCATATTGATCAAGCAAGCAAGGCTTTTGCTATTCTAGCTAGTGATGGGTTATGGAATGTCATCAGCGTGAAGAAGGCAATTCAGCTCGTGTTGCAGATGAGGGAGAGATGCTATTCAGAGAGGCAGAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAATGAGGCTAAAACACTCAGAACAAAGGATAATACTTCTGTAATTTTCTTAGACTTTGATACCTTCAACAGATTCTCTTGTAAAGTTGAATCCTAG

Predicted protein sequences of Glyma01g45030

Limit To All Plant Sequences

>Glyma01g45030.1   sequence type=predicted peptide   gene model=Glyma01g45030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPMLQTILTVLLLLMLLLIVIFLFFLFKPWRFFFSSRFLSSIKGELERPLFGDVGDASSFNRSNELPRDHDLEGACYPSEAHFRSPRTHGQVLVHKQRLQTLNMPQPQAADTLVVDVISDHSSSEDLDVGQTLKLPSSHLAQIQKHALPNFQIDRLQDFVQRDISDQRSCLTLEVISGPSQGLRYSVQSTSPSRLPLTLGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSTPINHPDTGSRNWGDPMNLTNGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMALHRGGKRFPMEDVYYYQWPLPGLDQFGIFGICDGHCGDGAAKSASKLFPEIIASILSDSLKRERVLSHRDASDILREAFSQTEAHMNNYYEGCTATVLLVWTDGGENFFAQCANVGDSTCIMSVNGKQIKMSEDHKFTNYSERLRIEETGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSEPYISQVVHIDQASKAFAILASDGLWNVISVKKAIQLVLQMRERCYSERQNTAEKIASLLLNEAKTLRTKDNTSVIFLDFDTFNRFSCKVES*

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