SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32120 | AT | Annotation by Michelle Graham. TAIR10: heat-shock protein 70T-2 | chr2:13651720-13653411 REVERSE LENGTH=563 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0101 | KOG | Molecular chaperones HSP70/HSC70, HSP70 superfamily | JGI | ISS | |
| PTHR19375 | Panther | HEAT SHOCK PROTEIN 70KDA | JGI | ISS | |
| PTHR19375:SF100 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00012 | PFAM | Hsp70 protein | JGI | ISS | |
| UniRef100_G7K2D5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock 70 kDa protein n=1 Tax=Medicago truncatula RepID=G7K2D5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JAU2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAU2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g44910 not represented in the dataset |
Glyma01g44910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g238600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g44910.1 sequence type=CDS gene model=Glyma01g44910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGAACCTGCATATACTGTGACATCTGACAGTGAAACCACTGGTGAAGAAAAATCGTCTACTTTTCCTGAAATAGCAATTGGCATTGATATTGGCACATCACAATGTAGTGTTGCTGTGTGGAATGGCTCCCAAGTGGAGCTTTTGAAGAACACAAGGAATCAAAAGATTATGAAATCATATGTAACCTTCAAAGATAACATCCCTTCTGGTGGAGTTAGCAGTCAACTCTCCCATGAGGACGAGATGTTGTCTGGAGCCACGATTTTCAACATGAAACGCTTGATTGGAAGAGTTGATACTGACCCTGTTGTCCATGCATGTAAGAATCTCCCATTTCTAGTGCAGACTTTGGACATTGGCGTTCGGCCATTTATTGCCGCATTAGTGAACAATATGTGGAGATCCACGACTCCAGAAGAAGTCCTGGCAATATTTCTGGTGGAATTAAGAGCAATGGCTGAAGCTCAGCTGAAACGAAGAATAAGAAATGTGGTTCTTACCGTCCCAGTTTCATTCAGTCGATTTCAGCTAACCCGGATAGAACGTGCTTGTGCCATGGCTGGCCTTCATGTTCTCAGGTTGATGCCTGAACCAACAGCTGTGGCTTTGTTATATGGACAGCAACAACAGCAGACTTCTCATGAGAATATGGGCAGTGGAACTGAGAAAATTGCTCTCATTTTCAGTATGGGTGCTGGTTATTGTGATGTTGCTGTCACTGCTACAGCGGGTGGAGTATCACAGATTAAAGCCTTGGCAGGAAGTACCATTGGTGGTGAAGACTTGCTTCAGAATATGATGCATCATCTGCTACCAAATTCTGAAAATCTATTTAAGAACCATGGGGTCAAAGAAATTAAACAGATGGGCCTGCTTCGAGTTGCAACCCAGGATGCAATTCGCCAGCTTTCCTCTCAGACCATCGTTCAGGTTGATGTAGACCTGGGAGATGGTTTGAAGATATGCAAGGCTGTTAACCGGGAGGAGTTTGAGGAGGTAAACAGAAAGGTGTTTGAGAAATGTGAAAGCCTTATCATACAGTGTTTGCAAGATGCCAAGGTAGAAGTTGAAGAAGTAAATGATGTGATAATTGTAGGCGGATGTTCTTACATCCCGAGGGTGAAAAATCTTGTTACTAACGTATGTAAAGGCAAGGAACTTTATAAAGGCATGAATCCTTTAGAAGCTGCTGTTTGCGGTGCAGCAGTGGAAGGAGCTATTGCTTCAGGCGTCAATGATCCCTTTGGGAACTTGGACTTGTTAACTATCCAAGCTACACCTCTTGCCATTGGGATTCGAGCTGATGGGAACAAGTTTGTCCCTGTAATTCCGAGGGATACTACAATGCCAGCACGGAAGGAGCTAGTTTTCACAACTACTCATGACAATCAAACTGAGGCGTTGATCCTTGTCTATGAAGGAGAGGGTGAAAAGGCAGAAGAAAACCACCTATTGGGATATTTCAAGATAATGGGAATACCTGCTGCTCCTAAAGGAGTTCCAGAAATCAATGTGTGCATGGACATAGACGCTGCAAACGTGCTAAGAGTTTTAGCTGGTGTTGTGATGCCTGGTTCTCGCCAACCTGCGATTCCTGTTATGGAGGTAAGGATGCCAACGGTGGATGATGGGCATGGTTGGTGCGCCGAGGCTCTAAATAGAACCTATGGTGCCACACTGGATTTAGTTACTCTCCAGAAGAAGGCATGA
>Glyma01g44910.1 sequence type=predicted peptide gene model=Glyma01g44910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEPAYTVTSDSETTGEEKSSTFPEIAIGIDIGTSQCSVAVWNGSQVELLKNTRNQKIMKSYVTFKDNIPSGGVSSQLSHEDEMLSGATIFNMKRLIGRVDTDPVVHACKNLPFLVQTLDIGVRPFIAALVNNMWRSTTPEEVLAIFLVELRAMAEAQLKRRIRNVVLTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYGQQQQQTSHENMGSGTEKIALIFSMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLLQNMMHHLLPNSENLFKNHGVKEIKQMGLLRVATQDAIRQLSSQTIVQVDVDLGDGLKICKAVNREEFEEVNRKVFEKCESLIIQCLQDAKVEVEEVNDVIIVGGCSYIPRVKNLVTNVCKGKELYKGMNPLEAAVCGAAVEGAIASGVNDPFGNLDLLTIQATPLAIGIRADGNKFVPVIPRDTTMPARKELVFTTTHDNQTEALILVYEGEGEKAEENHLLGYFKIMGIPAAPKGVPEINVCMDIDAANVLRVLAGVVMPGSRQPAIPVMEVRMPTVDDGHGWCAEALNRTYGATLDLVTLQKKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
