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Report for Sequence Feature Glyma01g44850

Feature Type:gene_model
Chromosome:Gm01
Start:55343736
stop:55344561
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14890AT Annotation by Michelle Graham. TAIR10: 2Fe-2S ferredoxin-like superfamily protein | chr4:8520887-8521351 FORWARD LENGTH=154 SoyBaseE_val: 6.00E-63ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0022900GO-bp Annotation by Michelle Graham. GO Biological Process: electron transport chain SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0051536GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding SoyBaseN/AISS
GO:0051537GO-mf Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding SoyBaseN/AISS
PF00111PFAM 2Fe-2S iron-sulfur cluster binding domain JGI ISS
UniRef100_C6T1B0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1B0_SOYBN SoyBaseE_val: 4.00E-102ISS
UniRef100_G7K3M7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ferredoxin n=1 Tax=Medicago truncatula RepID=G7K3M7_MEDTR SoyBaseE_val: 2.00E-69ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44850 not represented in the dataset

Glyma01g44850 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g00800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g238000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g44850.1   sequence type=CDS   gene model=Glyma01g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCCTTCAGTTAACAACAACACCCTTCACTCTTTTGAGACAACAAAGGCAGCACCCCACAAAGAAGAAGTCCACTGCTTCTCAGCTGAACCCTCCTCGGCCACGTCCCCTCAGAGTGAGTGTGAGGTCCTATAAAGTGGTGATTGAGCACGATGGAGAGTCCACTGAGGTGGAGGTTGAACCTGACGAGACCATTCTGTCAAAGGCATTGGACTCTGGCTTGTCTGTGCCTCATGATTGCAAGCTTGGAGTCTGCATGACATGCCCTGCTCGCCTCATTAGTGGATCTGTTGATCAGAGTGATGGAATGCTAAGTGATGATGTGGTGGAGCGTGGCTATGCACTCTTGTGTGCAGCCTACCCTCAATCCGATTGTCATATTAAGATTATCCCCGAGGATGAGCTATTGTCTTTGCAGTTAGCCACAGCCAATGACTAG

>Glyma01g44850.1   sequence type=predicted peptide   gene model=Glyma01g44850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLQLTTTPFTLLRQQRQHPTKKKSTASQLNPPRPRPLRVSVRSYKVVIEHDGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEDELLSLQLATAND*







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