Glyma01g44770 - SoyBase

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Report for Sequence Feature Glyma01g44770

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55309073
stop:	55312489
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05430	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:1594227-1595731 REVERSE LENGTH=269	SoyBase	E_val: 4.00E-27	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JAS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JAS5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZVZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T25N20.8 n=1 Tax=Arabidopsis thaliana RepID=Q9ZVZ5_ARATH	SoyBase	E_val: 2.00E-11	ISS

Expression Patterns of Glyma01g44770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44770 not represented in the dataset	Glyma01g44770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44770

Paralog	Evidence	Comments
Glyma11g00840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g237200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44770

Limit To All Plant Sequences

>Glyma01g44770.2   sequence type=transcript   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTCTCTTTCTCTTTTTTATTGCAAAATGGGTCTCGTTCAAAAATATAAAAATAAAATTTCTCATTAAACGTATGTGTAGAAAAAAATTAGAATGAAAATTTGTGCTATACATTAAAAAGAAAGTAAAGTCTAAATAAGAAGAAAGTGATGAGAGAGGAAAGGTGTGGCGTGGGTAGATAAAGAGTGTATCTGGATTCTGATCTGAATATATTGGCACGCATAAAAGGGAACGAACGTAATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTGTAAGTATTCTTAGACTTTTTCTTTTTTGTTCTTTAATTAAATGAATTAGGTGTTTTGATGGAACTAAAGCAACTAATTACTTACTAATTTAAGGATAGAAGGGCATGGACTGTGTTGGGGGACACCAGGGGCCATTTTGTGCCTTGGCCATCTCAAATGTCTTGGGGAAGGGAGTGTTAAACTTCAGTTGTGCATGCTGAGAAAGTTACTTACATGCCCTCCTTGAGTACTGTGTATTCAAGGAAAAATAAAGTTGATTTAAGTCCAATTTATCATGTTAATGGTTTCAAAATGTCTATCTATGCTTTGTCAATTGTTTTCTTTAAGGAAAAAAAATAGTAGCCTCACTAGCTGTCTCACTAGTAGTAAATGGTCATTACTCCTTACACATGTAGATATCGATCAAACTGGTA

>Glyma01g44770.4   sequence type=transcript   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTCTCTTTCTCTTTTTTATTGCAAAATGGGTCTCGTTCAAAAATATAAAAATAAAATTTCTCATTAAACGTATGTGTAGAAAAAAATTAGAATGAAAATTTGTGCTATACATTAAAAAGAAAGTAAAGTCTAAATAAGAAGAAAGTGATGAGAGAGGAAAGGTGTGGCGTGGGTAGATAAAGAGTGTATCTGGATTCTGATCTGAATATATTGGCACGCATAAAAGGGAACGAACGTAATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTAAAAACGCGAGTCCTGATATTATGTCGGAGGGTGACCCTCTTGATTGTCTTTTTGGTTATGCTCCTCCGGTGGAAGAGATCCATCATTCAAATTTCCCAAATAAACCATCAGGAATACATAATCGGGCTCGTAGAAAATCTCACCGTAGGCGTCGGATGCATAATCATGAGGACCTTTCAAACTCTGAGTCTGCAGCAGCTGTTTGACTATCATTTAACATTTGCAGACGTTGATGTTAGGATTATGCAAATTGTGGTTTTCTTAATAACGTAGGATTATGTAAATTGTGGTTTTTTTAATAACGTTCTGATCAACTTCCTTCTTGTCAAACAACATTTCAGAAAAGAACAGTGTTATTATTATGATAAGTACCATTTAATATGCCACATTATTATGCGTCTGACTTTCTCGGGGTTTTTTATGCTTTTCCTGATT

>Glyma01g44770.5   sequence type=transcript   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTCTCTTTCTCTTTTTTATTGCAAAATGGGTCTCGTTCAAAAATATAAAAATAAAATTTCTCATTAAACGTATGTGTAGAAAAAAATTAGAATGAAAATTTGTGCTATACATTAAAAAGAAAGTAAAGTCTAAATAAGAAGAAAGTGATGAGAGAGGAAAGGTGTGGCGTGGGTAGATAAAGAGTGTATCTGGATTCTGATCTGAATATATTGGCACGCATAAAAGGGAACGAACGTAATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGGTTTGTCATTTCCGTATCCTTAATGAAAGAAGATGCTTTCTTCTTTCTCTTCTAGTTATTGGCTTAACCTGGGAGATTTATATGTATTTTATTTAGTCTACCATAGTTACAGCAGATTATCATCAGTGCGTATGACGATAACCATTATACCTTCATTGCAGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGGATTTGGTACTTACTGTGGACCGTGGATGTTTAATAGATCCTCGTATTCTCATGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTAAAAACGCGAGTCCTGATATTATGTCGGAGGGTGACCCTCTTGATTGTCTTTTTGGTTATGCTCCTCCGGTGGAAGAGATCCATCATTCAAATTTCCCAAATAAACCATCAGGAATACATAATCGGGCTCGTAGAAAATCTCACCGTAGGCGTCGGATGCATAATCATGAGGACCTTTCAAACTCTGAGTCTGCAGCAGCTGTTTGACTATCATTTAACATTTGCAGACGTTGATGTTAGGATTATGCAAATTGTGGTTTTCTTAATAACGTAGGATTATGTAAATTGTGGTTTTTTTAATAACGTTCTGATCAACTTCCTTCTTGTCAAACAACATTTCAGAAAAGAACAGTGTTATTATTATGATAAGTACCATTTAATATGCCACATTATTATGCGTCTGACTTTCTCGGGGTTTTTTATGCTTTTCCTGATT

Coding sequences of Glyma01g44770

Limit To All Plant Sequences

>Glyma01g44770.1   sequence type=CDS   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGGATTTGGTACTTACTGTGGACCGTGGATGTTTAATAGATCCTCGTATTCTCATGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTAAAAACGCGAGTCCTGATATTATGTCGGAGGGTGACCCTCTTGATTGTCTTTTTGGTTATGCTCCTCCGGTGGAAGAGATCCATCATTCAAATTTCCCAAATAAACCATCAGGAATACATAATCGGGCTCGTAGAAAATCTCACCGTAGGCGTCGGATGCATAATCATGAGGACCTTTCAAACTCTGAGTCTGCAGCAGCTGTTTGA

>Glyma01g44770.2   sequence type=CDS   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTGTAAGTATTCTTAGACTTTTTCTTTTTTGTTCTTTAATTAAATGA

>Glyma01g44770.4   sequence type=CDS   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAGCAGCGTTGCTCGAACTTGATCGAGTTCTCAAGTCCAAGAAGGAAATGTTGACGCCTCGGGAAGCAAATATTCTTCTATCGTGGAAATCTAAATCTCTGATGGATCTCGCTGCCGGTGCACTTGGTGGGACCGCAGCTGCAGGGGCTGCAACTTGGAAACTCAATGGACTATTTCGAATATGCCTTTCAGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTAAAAACGCGAGTCCTGATATTATGTCGGAGGGTGACCCTCTTGATTGTCTTTTTGGTTATGCTCCTCCGGTGGAAGAGATCCATCATTCAAATTTCCCAAATAAACCATCAGGAATACATAATCGGGCTCGTAGAAAATCTCACCGTAGGCGTCGGATGCATAATCATGAGGACCTTTCAAACTCTGAGTCTGCAGCAGCTGTTTGA

>Glyma01g44770.5   sequence type=CDS   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAATAGATCCTCGTATTCTCATGCAGATCAGATTCTTACAATGGATGGTAGTATATTACAGAAGGAGTTAGCGAATATAACGGTGACAAAATACCAGAATGATCCTTTGCTAATGCGGCTTATATCTAAGCATTTGTACTTGGAGAGGATTTTTGATGATTCAACCTCTAATAATCCTACATTAAGATGGAGATACCGGAATTTCTTTAGCGATAATGCAGTCAATGGTCATAGGACACATGATCGTGAATCTAATGATAAATCCCAAGGCAGGTCTGAAAATGTCACCGACAGCAAAAGAACAAATCTTAAGACCAAGCGTACTTTTAAAAACGCGAGTCCTGATATTATGTCGGAGGGTGACCCTCTTGATTGTCTTTTTGGTTATGCTCCTCCGGTGGAAGAGATCCATCATTCAAATTTCCCAAATAAACCATCAGGAATACATAATCGGGCTCGTAGAAAATCTCACCGTAGGCGTCGGATGCATAATCATGAGGACCTTTCAAACTCTGAGTCTGCAGCAGCTGTTTGA

Predicted protein sequences of Glyma01g44770

Limit To All Plant Sequences

>Glyma01g44770.1   sequence type=predicted peptide   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAALLELDRVLKSKKEMLTPREANILLSWKSKSLMDLAAGALGGTAAAGAATWKLNGLFRICLSAGFGTYCGPWMFNRSSYSHADQILTMDGSILQKELANITVTKYQNDPLLMRLISKHLYLERIFDDSTSNNPTLRWRYRNFFSDNAVNGHRTHDRESNDKSQGRSENVTDSKRTNLKTKRTFKNASPDIMSEGDPLDCLFGYAPPVEEIHHSNFPNKPSGIHNRARRKSHRRRRMHNHEDLSNSESAAAV*

>Glyma01g44770.2   sequence type=predicted peptide   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAALLELDRVLKSKKEMLTPREANILLSWKSKSLMDLAAGALGGTAAAGAATWKLNGLFRICLSADQILTMDGSILQKELANITVTKYQNDPLLMRLISKHLYLERIFDDSTSNNPTLRWRYRNFFSDNAVNGHRTHDRESNDKSQGRSENVTDSKRTNLKTKRTFVSILRLFLFCSLIK*

>Glyma01g44770.4   sequence type=predicted peptide   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAALLELDRVLKSKKEMLTPREANILLSWKSKSLMDLAAGALGGTAAAGAATWKLNGLFRICLSADQILTMDGSILQKELANITVTKYQNDPLLMRLISKHLYLERIFDDSTSNNPTLRWRYRNFFSDNAVNGHRTHDRESNDKSQGRSENVTDSKRTNLKTKRTFKNASPDIMSEGDPLDCLFGYAPPVEEIHHSNFPNKPSGIHNRARRKSHRRRRMHNHEDLSNSESAAAV*

>Glyma01g44770.5   sequence type=predicted peptide   gene model=Glyma01g44770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFNRSSYSHADQILTMDGSILQKELANITVTKYQNDPLLMRLISKHLYLERIFDDSTSNNPTLRWRYRNFFSDNAVNGHRTHDRESNDKSQGRSENVTDSKRTNLKTKRTFKNASPDIMSEGDPLDCLFGYAPPVEEIHHSNFPNKPSGIHNRARRKSHRRRRMHNHEDLSNSESAAAV*

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