Glyma01g44760 - SoyBase

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Report for Sequence Feature Glyma01g44760

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55306610
stop:	55308587
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14820	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:8507794-8510038 REVERSE LENGTH=722	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF182	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7K3N9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K3N9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JAS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JAS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g44760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44760

Paralog	Evidence	Comments
Glyma11g00850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g237100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g44760

Limit To All Plant Sequences

>Glyma01g44760.1   sequence type=CDS   gene model=Glyma01g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCACGTGAAGCAAGTTGATGCTCAAATCCTCGGTTCCAAAATGGAGAATTCAAAGTCCCTCCTTTGCTGTTGCACTCTCCCTTCTCCTTCAGCCCTTGACTACGCCCTCTCCCTCTTCTCCCACCCGTTCAGCTTCCCCCCATTGTTCAAGTCCGTCTCTAAACTTTCTGCCTTCAGTCTCCGCTTGGAGATTCACGGCCTCGCTTCCAAGTTCGGCTTCTTCCACGCTGACCCATTTATTCAGACTGCCTTGATTGCCATGTATGATGCATGTGGACGCATCATGGATGCCCGTTTGGTGTTTGATAAAGTGTCTCATCGAGATGTCGTTACCTGGAATATTATGATCGATGCCTATTCCCAGAATGGTCATTATGCCCATCTTTTAAAGCTCTATGAAGAAATGAAGACTTCTGGTACGGAGCCAGATGCTATTATCCTTTGTACTGTGCTTTCTGCTTGTGGCCACGCTGGAAATTTAAGCTATGGCAAATTAATTCATCAGTTCACTATGGATAATGGTTTTCGTGTTGACTCTCATCTACAGACTGCTCTTGTTAACATGTATGCAAATTGTGCGATGCTTTCGGGGTATGCGAAACTTGGAATGGTCCAAGATGCTCGCTTCATATTTGACCAAATGGTTGAAAAGGACTTGGTGTGTTGGAGGGCTATGATATCTGGTTATGCCGAAAGTGATGAGCCTCTGGAGGCTCTTCAATTGTTCAATGAAATGCAACGGCGAATAATAGTGCCTGATCAGATCACGATGTTGAGTGTCATCTCTGCTTGTACTAATGTTGGTGCACTTGTTCAAGCAAAATGGATTCATACATACGCAGATAAAAATGGGTTTGGAAGAGCTCTGCCTATCAACAATGCCCTGATTGATATGTATGCTAAATGTGGAAATTTGGTTAAAGCGAGAGAGGTATTTGAGAATATGCCGAGAAAAAATGTGATATCTTGGTCCAGTATGATCAATGCTTTTGCCATGCATGGGGATGCTGACAGTGCCATAGCTCTTTTCCATAGGATGAAAGAACAAAATATTGAGCCCAATGGGGTTACGTTTATAGGTGTCCTCTATGCTTGCAGTCATGCAGGTTTGGTTGAGGAGGGCCAGAAATTCTTTTCCTCCATGATCAATGAGCATGGCATTTCTCCCCAACGTGAGCACTATGGTTGCATGGTGGACCTGTATTGTAGAGCCAATCACTTGAGAAAAGCCATGGAGCTTATTGAGACAATGCCTTTCCCGCCAAATGTTATCATTTGGGGATCCCTTATGTCTGCTTGTCAAAATCACGGTGAGGTTGAGTTAGGAGAATTTGCTGCCAAACAACTTCTTGAGTTGGAGCCTGATCATGATGGGGCCCTTGTGGTTTTGTCAAACATTTATGCCAAAGAAAAAAGGTGGGAGGATGTTGGGCTGATCAGGAAATTAATGAAACATAAAGGAATCTCAAAGGAGAAGGCATGTAGTAAGATTGAAGTGAACAAAGAGGTGCATGTGTTTATGATGGCAGATGGATATCATAAGCAATCAGATGAAATATACAAAATGTTGGATGCGGTAGTCAGTCAACTGAAGCTGGTTGGCTACACACCCAGTACTTTGGGCATCTTGGTTGATTTAGAAGAGGAAGAGAAAAAAGAAGTAGTTCTCTGGCATAGTGAGAAATTAGCACTGTGCTACGGGTTAATTGGTGAGAGAAAAGAATCATGCATTCGCATAGTTAAAAATCTTAGAATATGTGAGGACTGCCATTCCTTTATGAAATTGGTCTCAAAGTTGTATCGAATAGAGATTGTCATGAGAGATAGGACTTGGTTTCACCATTTTAATGGTGGAATTTGTTCTTGTAGAGACTATTGGTGA

Predicted protein sequences of Glyma01g44760

Limit To All Plant Sequences

>Glyma01g44760.1   sequence type=predicted peptide   gene model=Glyma01g44760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RHVKQVDAQILGSKMENSKSLLCCCTLPSPSALDYALSLFSHPFSFPPLFKSVSKLSAFSLRLEIHGLASKFGFFHADPFIQTALIAMYDACGRIMDARLVFDKVSHRDVVTWNIMIDAYSQNGHYAHLLKLYEEMKTSGTEPDAIILCTVLSACGHAGNLSYGKLIHQFTMDNGFRVDSHLQTALVNMYANCAMLSGYAKLGMVQDARFIFDQMVEKDLVCWRAMISGYAESDEPLEALQLFNEMQRRIIVPDQITMLSVISACTNVGALVQAKWIHTYADKNGFGRALPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHGISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEVELGEFAAKQLLELEPDHDGALVVLSNIYAKEKRWEDVGLIRKLMKHKGISKEKACSKIEVNKEVHVFMMADGYHKQSDEIYKMLDAVVSQLKLVGYTPSTLGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKLYRIEIVMRDRTWFHHFNGGICSCRDYW*

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