Glyma01g44700 - SoyBase

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Report for Sequence Feature Glyma01g44700

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55279049
stop:	55281688
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34670	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S3Ae \| chr4:16548724-16550222 FORWARD LENGTH=262	SoyBase	E_val: 1.00E-161	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1628	KOG	40S ribosomal protein S3A	JGI		ISS
PTHR11830	Panther	40S RIBOSOMAL PROTEIN S3A	JGI		ISS
PF01015	PFAM	Ribosomal S3Ae family	JGI		ISS
UniRef100_C6TLV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLV6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7K3P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S3a-like protein n=1 Tax=Medicago truncatula RepID=G7K3P1_MEDTR	SoyBase	E_val: 2.00E-175	ISS

Expression Patterns of Glyma01g44700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44700 not represented in the dataset	Glyma01g44700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44700

Paralog	Evidence	Comments
Glyma11g00890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g236600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44700

Limit To All Plant Sequences

>Glyma01g44700.2   sequence type=transcript   gene model=Glyma01g44700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGAGCAGGGAGGACAAGGAAAGAGAAAAAAAATGTGCTGCTACCTTACAAAGGAGAATGTGCGAGAGGGAGAGAAAAAGGTAGCGGAGAAGATTATATAATTAATTTGATTTTAGAAAGAAAAGAAAAAGGGAGTGGATATAGGCATAGAAATAGCTTCCTTCGATAAACAAAGCCCAAGCGGGAAACAAGCCCAAGTAGGGTTTTAAAGAATATAAAGATTAAAGAGGAGGTGTGCTGAGACAGGTAGGGTTTCGAGTTACAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGTCTTTCAGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTGAGGATGTTCAAGGGAAAAATGTTCTGACAAACTTTTGGGGAATGGATTTCACAACTGATAAGTTGAGGTCCTTGGTGCGGAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTCAAGACCACTGATAATTATACGTTGAGGATGTTCTGCATTGGCTTTACCAAGAGGCGTAGTAATCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAAGTCAGACAGATTCGCAGGAAGATGAGAGAGATAATGGTAAACCAGGCAGCTGCCTGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCTGAAATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATATATCCTCTACAGAATGTGTTTATTCGTAAAGTTAAGATTCTTAAAGCTCCAAAGTTTGATCTAGGAAAACTGATGGAGGTATGTGCTTTTTATCGCAAATTTCCTTGACCGCAGTTTCTTATGTCTAATGAATGTTACAATGAGTTCATTATTTTTCTATCTTAATGAAAAAGGTCAATCATTGTAGAATTTATTGAGTTGTACTGTTTATCTGGTTGGGGCAAAAAATTATCATAAAAAATGCTTAGGATCCACTCTTTCCCCCTTCCATTATTTTGTCTGTTGATATGTTGACCATTCTTAAATTAACGAGTCATTTGGATTAGAAGCATTTCTTCAAGAATTTTCTTACAATTCTTTTTTGGGGTGCAAGCATGCAGTTTTAAACTTCTGTTCAGTGGTGTGG

Coding sequences of Glyma01g44700

Limit To All Plant Sequences

>Glyma01g44700.1   sequence type=CDS   gene model=Glyma01g44700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGTCTTTCAGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTGAGGATGTTCAAGGGAAAAATGTTCTGACAAACTTTTGGGGAATGGATTTCACAACTGATAAGTTGAGGTCCTTGGTGCGGAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTCAAGACCACTGATAATTATACGTTGAGGATGTTCTGCATTGGCTTTACCAAGAGGCGTAGTAATCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAAGTCAGACAGATTCGCAGGAAGATGAGAGAGATAATGGTAAACCAGGCAGCTGCCTGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCTGAAATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATATATCCTCTACAGAATGTGTTTATTCGTAAAGTTAAGATTCTTAAAGCTCCAAAGTTTGATCTAGGAAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGTGCCAAGGTGGATAGACCTGCTGATGAAACCTTGGCTGAGGAAGCAACTGAAGTAGTTGGAGCTTGA

>Glyma01g44700.2   sequence type=CDS   gene model=Glyma01g44700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCCGCTGATCCCTTTGCCAAGAAGGACTGGTACGATATCAAGGCCCCTTCCGTCTTTCAGGTCAAGAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGAACCAAGATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCTGATCTCCAAGGAGATGAAGACCATGCCTTCAAGAAGATTCGTTTGAGAGCTGAGGATGTTCAAGGGAAAAATGTTCTGACAAACTTTTGGGGAATGGATTTCACAACTGATAAGTTGAGGTCCTTGGTGCGGAAATGGCAAACTTTAATTGAAGCTCATGTGGATGTCAAGACCACTGATAATTATACGTTGAGGATGTTCTGCATTGGCTTTACCAAGAGGCGTAGTAATCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAAGTCAGACAGATTCGCAGGAAGATGAGAGAGATAATGGTAAACCAGGCAGCTGCCTGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCTGAAATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATATATCCTCTACAGAATGTGTTTATTCGTAAAGTTAAGATTCTTAAAGCTCCAAAGTTTGATCTAGGAAAACTGATGGAGGTATGTGCTTTTTATCGCAAATTTCCTTGA

Predicted protein sequences of Glyma01g44700

Limit To All Plant Sequences

>Glyma01g44700.1   sequence type=predicted peptide   gene model=Glyma01g44700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQIRRKMREIMVNQAAACDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGAKVDRPADETLAEEATEVVGA*

>Glyma01g44700.2   sequence type=predicted peptide   gene model=Glyma01g44700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQVRQIRRKMREIMVNQAAACDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVCAFYRKFP*

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