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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14770 | AT | Annotation by Michelle Graham. TAIR10: TESMIN/TSO1-like CXC 2 | chr4:8481522-8484825 REVERSE LENGTH=674 | SoyBase | E_val: 2.00E-162 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0042127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG1171 | KOG | Metallothionein-like protein | JGI | ISS | |
| PTHR12446 | Panther | TESMIN/TSO1-RELATED | JGI | ISS | |
| PTHR12446:SF4 | Panther | TSO1 | JGI | ISS | |
| PF03638 | PFAM | Tesmin/TSO1-like CXC domain | JGI | ISS | |
| UniRef100_B3IX45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor CPP n=1 Tax=Lotus japonicus RepID=B3IX45_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337A0B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337A0B related cluster n=1 Tax=unknown RepID=UPI0002337A0B | SoyBase | E_val: 0 | ISS |
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Glyma01g44670 not represented in the dataset |
Glyma01g44670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g00920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g236300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g44670.2 sequence type=transcript gene model=Glyma01g44670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAATTCATCGGGTTTCAGTATATTTTTAACCTTTGCTATATGCAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATCAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCGGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAACCCGTTGGGCACATCGAAGCCTAAGGTTCCTTCTGAAGATGTAATTAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACATGCACACCATAACTCAAGTAAATTAGAGGAGGAAAACACTGGTAAAGGGATTTCAGTAAGAGATGCTTCAATCGAGCTATCTAGGGAGCACATAAAATTTTCAGATGAGCTACCGCAAGCGTTAAAATATAATTGTGGTAGCCCTGGCTTTGATCCTCCACCTTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGTGAGGCAGCAACAGATGTTGGCTATGTTCAGGAAGGCTGTAAAACTGATTCTGTAGAGGTTGAAGTGCATCTTCAGGAAGTATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCTGGATATGCTAATTTTTAATTCCCCAGGTGATGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGCCTCTTCTATTCGACTCAATGAATTTATGTCTATGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGATGCTTCTGGTTCTGCACCTGAAATTGAAGATCATTGTTCTGAGCTGATGACAGCCACAGGCACGAACCAAACACAAGATAATTTTGCCAATGTTGCTTTAGTGACTAGCAATTCAAATGAGAAAGCAAACGACCAGCTTGTTTCTGCCACTCACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGAGAATTCAAACACTGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCTAATGAAAAGCAATTGCTTCCTGCAAAACGCAATGGGGATTTACAGAGGGGAATTTTGCAAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACATCAGAATCTATCATTGGTACCTGTGTCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACACCAGCTTCAGCACGACACAAGAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGGGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTTCTGTAGGCATAGAAACTGATCCAGAAGAAACAGAAGCCACTGACAAGGGTGTGACAGAAAAAGCTTTACAGAAAACTGAAATTCAGAATACTGAAGATCATCCCGATTCTGCTACTGTGGCAACACCATTACGGCTTTCCAGACCATTGCTTCCATTGCCTTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGAAGAAATACCGGATATTCTGCAAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCACCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAGGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAGAAATGGGGAAAATTTTCATTGTAAGTTAGCCCCCCCTCCCTTTTTAATCCCATGTTTTTAGTTTGTTGCTTTAGGTTTATGTATATTCGGTTCAGTTTTACTTTGGCAATAATGTGTTGCATTACTATTTAAGTAATAGTTATAATCATTCCCGGGATTAATCTTTACGTTTTTCTGTTATGATTTTGGACATTTCTTTATGAATAAGTTGCTAATGGTACTCGTTGGAGGAATTATCTTAATTTAAGCTGTTGATTTGTCCC
>Glyma01g44670.1 sequence type=CDS gene model=Glyma01g44670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACGCCAGAGAGGAACCAGATCACCTCTACTCTCTCTAAGTTTGAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATCAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCGGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAACCCGTTGGGCACATCGAAGCCTAAGGTTCCTTCTGAAGATGTAATTAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACATGCACACCATAACTCAAGTAAATTAGAGGAGGAAAACACTGGTAAAGGGATTTCAGTAAGAGATGCTTCAATCGAGCTATCTAGGGAGCACATAAAATTTTCAGATGAGCTACCGCAAGCGTTAAAATATAATTGTGGTAGCCCTGGCTTTGATCCTCCACCTTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGTGAGGCAGCAACAGATGTTGGCTATGTTCAGGAAGGCTGTAAAACTGATTCTGTAGAGGTTGAAGTGCATCTTCAGGAAGTATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCTGGATATGCTAATTTTTAATTCCCCAGGTGATGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGCCTCTTCTATTCGACTCAATGAATTTATGTCTATGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGATGCTTCTGGTTCTGCACCTGAAATTGAAGATCATTGTTCTGAGCTGATGACAGCCACAGGCACGAACCAAACACAAGATAATTTTGCCAATGTTGCTTTAGTGACTAGCAATTCAAATGAGAAAGCAAACGACCAGCTTGTTTCTGCCACTCACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGAGAATTCAAACACTGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCTAATGAAAAGCAATTGCTTCCTGCAAAACGCAATGGGGATTTACAGAGGGGAATTTTGCAAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACATCAGAATCTATCATTGGTACCTGTGTCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACACCAGCTTCAGCACGACACAAGAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGGGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTTCTGTAGGCATAGAAACTGATCCAGAAGAAACAGAAGCCACTGACAAGGGTGTGACAGAAAAAGCTTTACAGAAAACTGAAATTCAGAATACTGAAGATCATCCCGATTCTGCTACTGTGGCAACACCATTACGGCTTTCCAGACCATTGCTTCCATTGCCTTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGAAGAAATACCGGATATTCTGCAAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCACCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAGGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG >Glyma01g44670.2 sequence type=CDS gene model=Glyma01g44670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGATTCACCTGTTTTCAACTATATCAATAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATCAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCGGTTTTCACATCACCCCATGTCAGCTGTCTCAAGGAATCTAGATTCCTCCGGAGACATAACCCGTTGGGCACATCGAAGCCTAAGGTTCCTTCTGAAGATGTAATTAAAGTTCACTCAAGTGAAGAGACTCTTGCAGATTCTACACATGCACACCATAACTCAAGTAAATTAGAGGAGGAAAACACTGGTAAAGGGATTTCAGTAAGAGATGCTTCAATCGAGCTATCTAGGGAGCACATAAAATTTTCAGATGAGCTACCGCAAGCGTTAAAATATAATTGTGGTAGCCCTGGCTTTGATCCTCCACCTTGTGGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGTGAGGCAGCAACAGATGTTGGCTATGTTCAGGAAGGCTGTAAAACTGATTCTGTAGAGGTTGAAGTGCATCTTCAGGAAGTATGTCAGATGGAGCCAAAGAGTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATGCCCTGGATATGCTAATTTTTAATTCCCCAGGTGATGCAGAAGCTTTTAAGGGTCTAATGCACAAACCCTTGGCCTCTTCTATTCGACTCAATGAATTTATGTCTATGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCAGATGCTTCTGGTTCTGCACCTGAAATTGAAGATCATTGTTCTGAGCTGATGACAGCCACAGGCACGAACCAAACACAAGATAATTTTGCCAATGTTGCTTTAGTGACTAGCAATTCAAATGAGAAAGCAAACGACCAGCTTGTTTCTGCCACTCACCGTACCATACGGAGGCGCTGTCTAGACTTTGAGATGGCCAATGTGCAAAGGAAGAACTCTGATGAGAATTCAAACACTGGTTCTAGTACATCTGAGTCTGATGAGAGGAATGTTGCTAATGAAAAGCAATTGCTTCCTGCAAAACGCAATGGGGATTTACAGAGGGGAATTTTGCAAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAAATTGTCTTCTGGAAGACAACTCAGTCTGCCCAGCTCTACTTCTTTGCAAATCTCTACAAGCCAAGAACATCAGAATCTATCATTGGTACCTGTGTCATCTGAAAGAGAATTGGATCCATCAGACAATGGGGTTCAGCCTGCTGAAGATTGTTCCCAGCCATCAGCTTACATGGCTGGTGAAGACTTCAATCAGAACAGCCCCAAAAAGAAAAGGCGTAAGTCGGAGACACCAGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAACCCTCTTGCATTTGCTCCTAAAGTCATCAGAAATTCTGATTCTGTACCTGAAATTGGGGATGACCCAAATAAAACACCAGCTTCAGCACGACACAAGAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGGGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGTAGAAAGGATGGTTCTGCTTCTGTAGGCATAGAAACTGATCCAGAAGAAACAGAAGCCACTGACAAGGGTGTGACAGAAAAAGCTTTACAGAAAACTGAAATTCAGAATACTGAAGATCATCCCGATTCTGCTACTGTGGCAACACCATTACGGCTTTCCAGACCATTGCTTCCATTGCCTTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCTCTGCATTGTTTGCCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCTCAAGCTAAGCATTTTCAAACTGTTCCAGATGAAGAAATACCGGATATTCTGCAAGGTGATAGCTCTCCTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCCTCACCTAACTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAGGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG
>Glyma01g44670.1 sequence type=predicted peptide gene model=Glyma01g44670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTPERNQITSTLSKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVPSEDVIKVHSSEETLADSTHAHHNSSKLEEENTGKGISVRDASIELSREHIKFSDELPQALKYNCGSPGFDPPPCGDEANSLLELPGEAATDVGYVQEGCKTDSVEVEVHLQEVCQMEPKSEGPDCYWDSLIPDALDMLIFNSPGDAEAFKGLMHKPLASSIRLNEFMSMLPHSTINNGRKMHIVDSDASGSAPEIEDHCSELMTATGTNQTQDNFANVALVTSNSNEKANDQLVSATHRTIRRRCLDFEMANVQRKNSDENSNTGSSTSESDERNVANEKQLLPAKRNGDLQRGILQGIGLHLNALAALKEYKGIQIEKLSSGRQLSLPSSTSLQISTSQEHQNLSLVPVSSERELDPSDNGVQPAEDCSQPSAYMAGEDFNQNSPKKKRRKSETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASVGIETDPEETEATDKGVTEKALQKTEIQNTEDHPDSATVATPLRLSRPLLPLPFSSKGKPPRSFVTTISGSALFASQKLGKPNPLWSQAKHFQTVPDEEIPDILQGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRRLILQSIPSFPSLTPHP* >Glyma01g44670.2 sequence type=predicted peptide gene model=Glyma01g44670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHNPLGTSKPKVPSEDVIKVHSSEETLADSTHAHHNSSKLEEENTGKGISVRDASIELSREHIKFSDELPQALKYNCGSPGFDPPPCGDEANSLLELPGEAATDVGYVQEGCKTDSVEVEVHLQEVCQMEPKSEGPDCYWDSLIPDALDMLIFNSPGDAEAFKGLMHKPLASSIRLNEFMSMLPHSTINNGRKMHIVDSDASGSAPEIEDHCSELMTATGTNQTQDNFANVALVTSNSNEKANDQLVSATHRTIRRRCLDFEMANVQRKNSDENSNTGSSTSESDERNVANEKQLLPAKRNGDLQRGILQGIGLHLNALAALKEYKGIQIEKLSSGRQLSLPSSTSLQISTSQEHQNLSLVPVSSERELDPSDNGVQPAEDCSQPSAYMAGEDFNQNSPKKKRRKSETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRNSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASVGIETDPEETEATDKGVTEKALQKTEIQNTEDHPDSATVATPLRLSRPLLPLPFSSKGKPPRSFVTTISGSALFASQKLGKPNPLWSQAKHFQTVPDEEIPDILQGDSSPITCIKTSSPNGKRISSPNCDLGSSPSRRGGRRLILQSIPSFPSLTPHP*
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