Report for Sequence Feature Glyma01g44640
Feature Type: gene_model
Chromosome: Gm01
Start: 55233128
stop: 55234930
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g44640
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G22690 AT
Annotation by Michelle Graham. TAIR10: INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopep
SoyBase E_val: 0 ISS
GO:0009451 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA modification
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010207 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II assembly
SoyBase N/A ISS
GO:0010380 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process
SoyBase N/A ISS
GO:0048564 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem I assembly
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7K3Q3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K3Q3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JAR2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JAR2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g44640
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g44640
Paralog Evidence Comments
Glyma11g00940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g44640 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g236000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g44640
Coding sequences of Glyma01g44640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g44640.2 sequence type=CDS gene model=Glyma01g44640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCTGCGTTATATCTGCTTTTGCCAAGTTGAAAGATCTTGAATTGGGTAAGAAAGTTGAGTTGGGTGTGGAACTTAACACACTCATGGTTAATGCACTGGTTGATATGTACATGAAATGTGGGGATATATGTGCTGCAAGGTGGATTTTTGATGAATGTACTGATAAGAATTTGGTTATGTACAATACTATCATGTCAAACTATGTGCAAGATGGGTGGGCTGGTGATGTGCTAGTAATATTGGATGAAATGCTGCAAAAAGGACCACGACCGGATAAGGTGACCATGTTATCTACTATTGCAGCTTGTGCACAGTTAGATGATCTTTCTGTTGGGGAGTCATCCCATACTTATGTCTTACAGAATGGACTTGAAGGTTGGGATAACATTTCCAATGCGATCATTGACTTGTACATGAAATGTGGCAAAAGAGAAGCAGCTTGCAAAGTTTTTGAGCATATGCCAAACAAGACGGTGGTGACTTGGAATTCGTTAATTGCAGGTTTGGTTAGAGATGGTGACATGGAATTAGCTTGGAGAGTCTTTGATGAGATGCTTGAGAGGGATCTTGTATCTTGGAACACTATGATCGGTGCATTGGTTCAAGTGAGCATGTTTGAGGAAGCAATTAAGCTATTCAGAGAGATGCACAACCAGGGGATTCAAGGAGATAGAGTGACAATGGTGGGCATTGCTTCTGCCTGTGGATATTTAGGAGCTCTTGATCTTGCCAAGTGGGTATGTACTTACATTGAGAAAAATGACATTCACTTGGACTTGCAGCTTGGCACAGCTTTGGTTGATATGTTTTCAAGATGTGGTGATCCCTCAAGTGCTATGCATGTTTTCAAAAGAATGAAAAAACGGGACGTGTCTGCCTGGACTGCTGCCGTCGGAGCTTTGGCAATGGAGGGAAATACAGAAGGGGCTATTGAGCTTTTTAATGAGATGCTTGAACAAAAGGTGAAACCAGATGATGTTGTTTTTGTGGCACTATTGACAGCATGTAGCCATGGGGGCTCTGTGGACCAAGGGAGGGAACTTTTTTGGTCAATGGAAAAAAGCCACGGAGTACATCCTCAGATTGTCCACTATGCATGTATGGTTGATTTGATGAGTCGAGCTGGGCTGCTGGAAGAAGCTGTTGATCTCATACAAACTATGCCAATAGAACCTAATGATGTTGTGTGGGGATCTCTGCTAGCAGCTTACAAAAATGTTGAATTGGCACATTATGCAGCTGCAAAGTTAACACAATTGGCCCCTGAAAGAGTTGGGATTCATGTGCTGTTATCTAACATATATGCATCAGCTGGAAAATGGACTGATGTAGCAAGAGTAAGGTTGCAAATGAAGAAGAAAGGGGTCCAGAAAGTTCCTGGATCAAGCTCAATAGAGGTTCACGGTTTGATTCACGAGTTCACCTCAGGTGATGAATCACACACAGAGAACACCCAGATTGGATTAATGCTTGAGGAAATAAACTGCAGGCTAAGCGAGGCAGGGTATGTTTCTGATAGAACCAATGTCTTACTCGATGTTGATGAGCAGGAGAAAGAGCATTTGCTCAGAAGACATAGTGCGAAACTAGCCATGGCTTATGGATTAATCACTACTGATCAAGGTATACCCATACGGGTAGTAAAAAATCTTCGAATGTGTTCTGATTGTCATTCATTTGCAAAATTAGTGTCAAAACTATACGATAGGGAAATTACAGTTAGAGACAATAAAAGGTATCATTTTTTCAAGGAAGGATTCTGTGCTTGTAGAGATTATTGGTAA
Predicted protein sequences of Glyma01g44640
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g44640.2 sequence type=predicted peptide gene model=Glyma01g44640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MICVISAFAKLKDLELGKKVELGVELNTLMVNALVDMYMKCGDICAARWIFDECTDKNLVMYNTIMSNYVQDGWAGDVLVILDEMLQKGPRPDKVTMLSTIAACAQLDDLSVGESSHTYVLQNGLEGWDNISNAIIDLYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRVFDEMLERDLVSWNTMIGALVQVSMFEEAIKLFREMHNQGIQGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHLDLQLGTALVDMFSRCGDPSSAMHVFKRMKKRDVSAWTAAVGALAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRELFWSMEKSHGVHPQIVHYACMVDLMSRAGLLEEAVDLIQTMPIEPNDVVWGSLLAAYKNVELAHYAAAKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKKKGVQKVPGSSSIEVHGLIHEFTSGDESHTENTQIGLMLEEINCRLSEAGYVSDRTNVLLDVDEQEKEHLLRRHSAKLAMAYGLITTDQGIPIRVVKNLRMCSDCHSFAKLVSKLYDREITVRDNKRYHFFKEGFCACRDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
