Report for Sequence Feature Glyma01g44440
Feature Type: gene_model
Chromosome: Gm01
Start: 55106491
stop: 55110458
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g44440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G13270 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:4246954-4249212 REVERSE LENGTH=752
SoyBase E_val: 0 ISS
GO:0009451 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA modification
SoyBase N/A ISS
GO:0016556 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA modification
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF154 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7M586 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M586_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1JAN8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAN8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g44440
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g44440
Paralog Evidence Comments
Glyma11g01090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g44440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g234100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g44440
Coding sequences of Glyma01g44440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g44440.1 sequence type=CDS gene model=Glyma01g44440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTTCAATAACTTGCCAGGGCTCTTGGGTGCTTTCCAATTCTTCACCAATAGTTGTAGCTAATGATAAAAATAATGATGCCAGACATGCCAATTTTGCTCAAATCCCTTCATGGGTCTCTTTGAAAAGCAGTCATTCTTCATTGAGGACCCATCAAAATCAACAAGGCCAAGTTGAAAACTTGCATTTGATTTCTTTAGCCAAACAAGGGAATCTTAGAGAAGTGCATGAATTCATTAGAAACATGGACAAAGTGGGTATTTCCATTAATCCTCGATCATACGAATACCTCTTTAAAATGTGTGGAACATTGGGAGCATTGTCTGATGGAAAATTGTTTCATAATAGACTGCAGAGAATGGCCAATAGCAATAAGTTCATTGACAATTGCATCCTTAAAATGTATTGCGACTGTAAGAGTTTCACAAGTGCAGAGAGATTCTTTGATAAAATAGTTGATCAGGATTTGTCCTCTTGGTCCACCATTATATCTGCTTACACTGAGGAAGGACGTATAGATGAAGCTGTTAGATTGTTCTTGCGTATGCTGGATTTGGGGATTACACCAAACTCCTCTATCTTTAGTACTCTTATAATGTCTTTTACAGATCCTTCAATGTTAGACCTTGGCAAACAGATACATTCTCAGCTGATAAGGATTGGCTTTGCTGCCAATATTTCTATTGAGACGTTAATCTCCAATATGTATGTAAAGTGTGGGTGGTTGGATGGTGCTGAAGTTGCCACCAATAAGATGACTAGGAAAAATGCTGTGGCTTGCACTGGGTTGATGGTGGGCTATACTAAAGCTGCAAGGAACAGGGATGCTCTGTTGTTATTTGGCAAGATGATAAGTGAAGGTGTAGAGTTGGATGGGTTCGTTTTCTCAATAATTCTCAAGGCTTGTGCTGCTTTGGGAGACTTATACACTGGAAAGCAAATTCATAGTTACTGTATAAAACTTGGCTTGGAATCCGAGGTCTCAGTTGGTACTCCACTAGTGGATTTTTATGTTAAGTGTGCAAGGTTTGAAGCTGCGCGTCAAGCATTTGAGAGCATACATGAACCAAATGATTTCTCGTGGAGTGCTTTAATTGCTGGATATTGCCAAAGTGGTCAATTTGACAGGGCTCTTGAGGTTTTTAAGGCAATAAGAAGTAAAGGAGTGTTATTGAATTCATTCATCTATACCAACATTTTCCAAGCATGCTCTGCTGTCTCAGATTTGATTTGTGGTGCTCAAATCCATGCAGATGCAATAAAAAAGGGGCTAGTTGCATACCTCTCTGGGGAGAGTGCTATGATCAGTATGTACTCAAAATGCGGCCAAGTGGACTATGCACATCAAGCATTTTTGACTATAGATAAACCTGATACTGTTGCATGGACTGCAATAATATGTGCTCATGCTTACCATGGCAAAGCTTTTGAAGCATTAAGGCTTTTTAAAGAGATGCAGGGGTCTGGTGTAAGGCCAAATGCGGTCACTTTCATAGGTTTGTTAAATGCTTGTAGTCATTCAGGTTTAGTTAAAGAGGGAAAGAAGATTTTGGATTCAATGAGTGACGAATACGGTGTGAACCCAACAATTGATCATTACAATTGCATGATTGATGTATACTCTCGAGCTGGACTGCTGCAGGAGGCTCTTGAGGTGATAAGGAGTCTGCCATTTGAACCTGATGTTATGAGTTGGAAGAGTTTATTAGGAGGATGTTGGAGCCATAGGAATCTTGAGATTGGGATGATTGCTGCTGACAACATCTTTCGCCTGGACCCACTAGACTCTGCTACTTATGTGATCATGTTCAACTTGTATGCTTTGGCTGGGAAGTGGGATGAAGCAGCACAATTTAGAAAGATGATGGCTGAAAGGAACTTGAGGAAGGAAGTCAGTTGCAGCTGGATTATTGTGAAGGGTAAAGTCCACCGCTTTGTGGTAGGTGATAGACACCACCCTCAAACAGAACAAATATACTCAAAATTAAAAGAACTCAATTTTTCTTTCAAAAAGAGCAAGGAGCGCCTTCTCAATGAAGAAAATGCTCTATGCGACTTTACTGAACGAAAAGAGCAGCTTCTTGATCATAGTGAGAGACTAGCTATAGCCTATGGTCTCATATGCACTGCAGCTGATACCCCCATTATGGTATTCAAAAATACACGATCATGCAAAGACTGCCATGATTTTGCGAAAAGAGTCTCAATAGTAACTGGTCGTGAATTAGTCGTGAGAGATGGCAACAGGTTTCATCATATTAATTCAGGGGAATGTTCTTGCCGTGATTATTGGTGA
Predicted protein sequences of Glyma01g44440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g44440.1 sequence type=predicted peptide gene model=Glyma01g44440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSITCQGSWVLSNSSPIVVANDKNNDARHANFAQIPSWVSLKSSHSSLRTHQNQQGQVENLHLISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMANSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLDHSERLAIAYGLICTAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
