Glyma01g44400 - SoyBase

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Report for Sequence Feature Glyma01g44400

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55086866
stop:	55090833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11755	AT	Annotation by Michelle Graham. TAIR10: Undecaprenyl pyrophosphate synthetase family protein \| chr1:3969987-3971488 REVERSE LENGTH=254	SoyBase	E_val: 2.00E-80	ISS
KOG2818	KOG	Predicted undecaprenyl diphosphate synthase	JGI		ISS
PTHR21528	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_G7K548	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nogo-B receptor n=1 Tax=Medicago truncatula RepID=G7K548_MEDTR	SoyBase	E_val: 3.00E-135	ISS
UniRef100_I1JAN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JAN3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g44400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44400 not represented in the dataset	Glyma01g44400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44400

Paralog	Evidence	Comments
Glyma11g01120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g233700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44400

Limit To All Plant Sequences

>Glyma01g44400.3   sequence type=transcript   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCTGCAGACCAAATACATTGCAGTGTCTCTTTCATCTCACAACGAACGTCTCAAGTGACAAAGTTTCTGAGAGTCTTACTCGTTTTGTTTTTGTTCTCTCTAATCTCTTGGTTCGCGTTGCAGATTAAATGATTTTGTATCTTTGGTTCTCTTTTAGGTTTGTACAGATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGTATTTCATATCAGTCGTGGGTAATTTGTTTGAAAGCTATTTCATCTCTTGTGGAGTATTAAAGAAATACAAGTCTCTTCATTCAGGAAAGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAGAAAAGGAATTTGGAGGTAGTTAAATGCACAAGCACAAAGCATAGGCGTGAAGAATAGAAAAATATCTAGCTAAATATATTTGTGGAAAAAGGGCTTTCTCACTAGTGGTTTTACTTACTCTAAATGTGTCAATCATCATGCATGAGAGATAGAATTGCACGTCATGACCGGGTTGTACCAACTGTTAATTTTTTTTTTTTTTAAGATCTGGTAATTTAAAAGGTGGATTGATCTGGTAATTTAAAAGGTGGATTTTTATTTGATGCCGCCACCACCACAACGGGAGATTCGTATGGCGGATAAATTCCTCCTCCCAGTTATATCAAAGCCAGCAGCCAGATTTTGTCTAGACATGATCCTCCGTTGAATCAATATTATAAGTCAATATAAATTAGTAAA

>Glyma01g44400.4   sequence type=transcript   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCATTTTAATTAAAGTGCTGCAGACCAAATACATTGCAGTGTCTCTTTCATCTCACAACGAACGTCTCAAGTGACAAAGTTTCTGAGAGTCTTACTCGTTTTGTTTTTGTTCTCTCTAATCTCTTGGTTCGCGTTGCAGATTAAATGATTTTGTATCTTTGGTTCTCTTTTAGGATCAATGGATTTTAGAGATTTAGCTCACAAGTTCTCTCGTTGTATTGTTACTATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAGAAAAGGAATTTGGAGGTAGTTAAATGCACAAGCACAAAGCATAGGCGTGAAGAATAGAAAAATATCTAGCTAAATATATTTGTGGAAAAAGGGCTTTCTCACTAGTGGTTTTACTTACTCTAAATGTGTCAATCATCATGCATGAGAGATAGAATTGCACGTCATGACCGGGTTGTACCAACTGTTAATTTTTTTTTTTTTTAAGATCTGGTAATTTAAAAGGTGGATTGATCTGGTAATTTAAAAGGTGGATTTTTATTTGATGCCGCCACCACCACAACGGGAGATTCGTATGGCGGATAAATTCCTCCTCCCAGTTATATCAAAGCCAGCAGCCAGATTTTGTCTAGACATGATCCTCCGTTGAATCAATATTATAAGTCAATATAAATTAGTAAA

>Glyma01g44400.5   sequence type=transcript   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCATTTTAATTAAAGTGCTGCAGACCAAATACATTGCAGTGTCTCTTTCATCTCACAACGAACGTCTCAAGTGACAAAGTTTCTGAGAGTCTTACTCGTTTTGTTTTTGTTCTCTCTAATCTCTTGGTTCGCGTTGCAGATTAAATGATTTTGTATCTTTGGTTCTCTTTTAGGTTTGTACAGATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGAAAGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAGAAAAGGAATTTGGAGGTAGTTAAATGCACAAGCACAAAGCATAGGCGTGAAGAATAGAAAAATATCTAGCTAAATATATTTGTGGAAAAAGGGCTTTCTCACTAGTGGTTTTACTTACTCTAAATGTGTCAATCATCATGCATGAGAGATAGAATTGCACGTCATGACCGGGTTGTACCAACTGTTAATTTTTTTTTTTTTTAAGATCTGGTAATTTAAAAGGTGGATTGATCTGGTAATTTAAAAGGTGGATTTTTATTTGATGCCGCCACCACCACAACGGGAGATTCGTATGGCGGATAAATTCCTCCTCCCAGTTATATCAAAGCCAGCAGCCAGATTTTGTCTAGACATGATCCTCCGTTGAATCAATATTATAAGTCAATATAAATTAGTAAATTATGTGTTTTATATTGAATAAATAATAATTGACAAAATAATTAATATCTATGGATAATTTTTAA

>Glyma01g44400.6   sequence type=transcript   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCATTTTAATTAAAGTGCTGCAGACCAAATACATTGCAGTGTCTCTTTCATCTCACAACGAACGTCTCAAGTGACAAAGTTTCTGAGAGTCTTACTCGTTTTGTTTTTGTTCTCTCTAATCTCTTGGTTCGCGTTGCAGATTAAATGATTTTGTATCTTTGGTTCTCTTTTAGATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGAAAGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAGAAAAGGAATTTGGAGGTAGTTAAATGCACAAGCACAAAGCATAGGCGTGAAGAATAGAAAAATATCTAGCTAAATATATTTGTGGAAAAAGGGCTTTCTCACTAGTGGTTTTACTTACTCTAAATGTGTCAATCATCATGCATGAGAGATAGAATTGCACGTCATGACCGGGTTGTACCAACTGTTAATTTTTTTTTTTTTTAAGATCTGGTAATTTAAAAGGTGGATTGATCTGGTAATTTAAAAGGTGGATTTTTATTTGATGCCGCCACCACCACAACGGGAGATTCGTATGGCGGATAAATTCCTCCTCCCAGTTATATCAAAGCCAGCAGCCAGATTTTGTCTAGACATGATCCTCCGTTGAATCAATATTATAAGTCAATATAAATTAGTAAA

Coding sequences of Glyma01g44400

Limit To All Plant Sequences

>Glyma01g44400.1   sequence type=CDS   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTTAGAGATTTAGCTCACAAGTTCTCTCGTTGTATTGTTACTATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGTATTTCATATCAGTCGTGGGTAATTTGTTTGAAAGCTATTTCATCTCTTGTGGAGTATTAAAGAAATACAAGTCTCTTCATTCAGGAAAGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG

>Glyma01g44400.3   sequence type=CDS   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTTGTATCTTTGGTTCTCTTTTAGGTTTGTACAGATTGGAAATCTCGGGCTTCAACTGCTATGGTACTTTCTGCGAATAATTCTCAGCGCATGGTATTTCATATCAGTCGTGGGTAATTTGTTTGAAAGCTATTTCATCTCTTGTGGAGTATTAAAGAAATACAAGTCTCTTCATTCAGGAAAGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG

>Glyma01g44400.4   sequence type=CDS   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACTTTCTGCGAATAATTCTCAGCGCATGGTTCGCTACCTTGCCATTGTCATAGAAAGTGAAGAAGCTTATCAGATTTCCAGAGTTGTTAAACTTTTGCAGTGGCTGGACATTATTGGTGTAAAGAATGTGTGCCTCTATGACATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG

>Glyma01g44400.5   sequence type=CDS   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG

>Glyma01g44400.6   sequence type=CDS   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGAGTATTGAAGAAGTCTAAGGAAACCATCTTTAAAGAATTGAAGAATGCAAAATCCATTGAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAGAATTTCTTTCTTATGCGGATGGGAAGGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGCACTTGAAACGACATAAATTGGGTGGAGAACTAGATCTAATCTTGTTAGAACCTCAATTGAATGAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGACCTTTTACTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATACACATGGGATCATTGAACTTCTTGAGATATGGTTCCTTAATGAAAGCCATTTACAACTTCACGAAAGTGCACCAAAATTATGGTACGTAG

Predicted protein sequences of Glyma01g44400

Limit To All Plant Sequences

>Glyma01g44400.1   sequence type=predicted peptide   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFRDLAHKFSRCIVTIGNLGLQLLWYFLRIILSAWYFISVVGNLFESYFISCGVLKKYKSLHSGKVRYLAIVIESEEAYQISRVVKLLQWLDIIGVKNVCLYDMNGVLKKSKETIFKELKNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHKLGGELDLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFLRYGSLMKAIYNFTKVHQNYGT*

>Glyma01g44400.3   sequence type=predicted peptide   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILYLWFSFRFVQIGNLGLQLLWYFLRIILSAWYFISVVGNLFESYFISCGVLKKYKSLHSGKVRYLAIVIESEEAYQISRVVKLLQWLDIIGVKNVCLYDMNGVLKKSKETIFKELKNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHKLGGELDLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFLRYGSLMKAIYNFTKVHQNYGT*

>Glyma01g44400.4   sequence type=predicted peptide   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSANNSQRMVRYLAIVIESEEAYQISRVVKLLQWLDIIGVKNVCLYDMNGVLKKSKETIFKELKNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHKLGGELDLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFLRYGSLMKAIYNFTKVHQNYGT*

>Glyma01g44400.5   sequence type=predicted peptide   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGVLKKSKETIFKELKNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHKLGGELDLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFLRYGSLMKAIYNFTKVHQNYGT*

>Glyma01g44400.6   sequence type=predicted peptide   gene model=Glyma01g44400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGVLKKSKETIFKELKNAKSIEEVNEVVALHDPDHMTLEFLSYADGKEAVAKAANLIFVEHLKRHKLGGELDLILLEPQLNEALQIVGSKGPEPDLLLVYGPVRSHLGFPAWRLRYTEIIHMGSLNFLRYGSLMKAIYNFTKVHQNYGT*

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