Glyma01g44350 - SoyBase

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Report for Sequence Feature Glyma01g44350

Feature Type:	gene_model
Chromosome:	Gm01
Start:	55033977
stop:	55038458
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16800	AT	Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferases (NAT) superfamily protein \| chr5:5524509-5526295 REVERSE LENGTH=270	SoyBase	E_val: 1.00E-114	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
KOG3138	KOG	Predicted N-acetyltransferase	JGI		ISS
PTHR14744	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR14744:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00583	PFAM	Acetyltransferase (GNAT) family	JGI		ISS
UniRef100_B7FKF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-acetyltransferase n=1 Tax=Medicago truncatula RepID=B7FKF5_MEDTR	SoyBase	E_val: 2.00E-149	ISS
UniRef100_I1JAM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JAM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g44350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44350 not represented in the dataset	Glyma01g44350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44350

Paralog	Evidence	Comments
Glyma11g01170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g233200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44350

Limit To All Plant Sequences

>Glyma01g44350.3   sequence type=transcript   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACATGCGATGGAAGAACGGAATGACGAGATCCTAAACAAAATCATAAGAGAGAAGAATTGAATCGATACCTCTGCATATGAAATACTACTACTAAACAATAAATTTAAAAAGGGTAAAAATAAAAATATATATTGAAAAGAGAAGGTGAAGGTTAGGTTGGGTTGTTAGAGACAAGGGTGGAACGCATTCAATTGAATTTGGGATAGTCTTAAGAAGAAATGATTGTGTTATGGTAATCCCAATATCTCATCTCTGTTTCTCAACACTCTCTCTCTATTTGGATTCAAATCCCATCTTTGTTGCCTCGATCACTCCGCTTTGAGGAGGTGATTGATTACAATCACTATTCAACTTTTTACTTTATTGTTATGCTATACAACTAAATCCTATCCCGCGGTTACTACTCTCTATCAATACTTTGATTGCTACTTGATTCTTTAGGAAAGGGTGTTGTTGTATAAGATCATGACTTAGGATATTTTTTTGTTTGTTTGGGCAGGTGTGTGAGTTGTTGTAAATCCCAGCTATGGATTAAAAATAAACATTATATGATTACTATTTTTTTGTGTGTGTGGGAAACTTCCAAAAAGTTGTTGTTTTTGATAGATTATATATTTAGTGTTGTCTATCAAAGGAAGTTGTTTAGGTTGAGAGCAATTGAAGGTCAACCGTATAAAGTTATCTGGGGAATGATTTACTTTAGGTTCAGAACAATTGAAGGTCGAAATCCAGGTTTAAAAGGGAAAAAAAAAGGGATATTCTAGTTTTAACTTCTTTCATCTAGGAAGTGTAGATGCCTCTTGGTATGTTGGATTTTCTCAAGAACAGTGGTAAAGAATCTCACAGCTAAGTAAGGGTATTGTACTTGGCTCTGCCTCTGACCCAGTGAATGGAATTAACTCAAGTTGATTTCACTCCAATTCTGGTAGGAGAGTTTGGACTTTGGATTTCCTCACATGTGCTATTTGCTGCTGTAATTCATGAACAACTGAACACTTGCTCTTGCAATTTATAGCAACTATTCAATGGCCCTTTTCTTTGTTGCTGTGTAAATGGAAGCAGCTGTTATTGCACGATTTTTTCAAGTATATCAGATATTTGCTGGGGATTAAGTGAAAAAGACTCAATGGTAAACCCAAAAGTGTCTACTCAACCAAAAATATGCTACAGGCCTATTCAACCTTCTGACCTGGACATTTTAGAGCATATCCATTGCAGATTATTTCCCATCAGGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTCATTGGATTTGTAACAGCACGAATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATATGCTTGGATATGACTCGGCTAAATCTGACCAAACTCTAGTCTATGTTCTGACGCTGGGAGTAGTGGAAGCATATAGAAGTCTTGGAATAGCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACATGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAATTTGTACAAGAAAATGTCTTTCAAGTGTGTGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGTGGCAGCAAGGCTGTGCAAGAACGGAGGCAGGAAGATCTCAAGGCGGGCAAAGTGTAAAGAAAGTCATTCTCTTGTGTCAGCAACACCCAACAAAAGAAACGTGGCAGTCGAGTGTCCTGGTTATGAGTGTGTTTAACTTTGTTTTTTATTTATATATTTTTTAAAAGCTTTTCTGTTTCCTGTATCATTCAACCTCACTATTGATTCCCTCTAGAAAAGTCATATTAAAGCCAAACATTGTATTTACTTGCTATGATGTCATAATAAACTTTCTCGATCTGGTGAATTCACACATACTGTTAGAAGTTGATAACAATAATCTCTCAGTTTATGCGATCAATGGAACTTTTGATTCTGTCGATCATTGCTACAATTAGT

>Glyma01g44350.4   sequence type=transcript   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACATGCGATGGAAGAACGGAATGACGAGATCCTAAACAAAATCATAAGAGAGAAGAATTGAATCGATACCTCTGCATATGAAATACTACTACTAAACAATAAATTTAAAAAGGGTAAAAATAAAAATATATATTGAAAAGAGAAGGTGAAGGTTAGGTTGGGTTGTTAGAGACAAGGGTGGAACGCATTCAATTGAATTTGGGATAGTCTTAAGAAGAAATGATTGTGTTATGTTATAGCAACTATTCAATGGCCCTTTTCTTTGTTGCTGTGTAAATGGAAGCAGCTGTTATTGCACGATTTTTTCAAGTATATCAGATATTTGCTGGGGATTAAGTGAAAAAGACTCAATGGTAAACCCAAAAGTGTCTACTCAACCAAAAATATGCTACAGGCCTATTCAACCTTCTGACCTGGACATTTTAGAGCATATCCATTGCAGATTATTTCCCATCAGGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTCATTGGATTTGTAACAGCACGAATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATATGCTTGGATATGACTCGGCTAAATCTGACCAAACTCTAGTCTATGTTCTGACGCTGGGAGTAGTGGAAGCATATAGAAGTCTTGGAATAGCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACATGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAATTTGTACAAGAAAATGTCTTTCAAGTGTGTGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGTGGCAGCAAGGCTGTGCAAGAACGGAGGCAGGAAGATCTCAAGGCGGGCAAAGTGTAAAGAAAGTCATTCTCTTGTGTCAGCAACACCCAACAAAAGAAACGTGGCAGTCGAGTGTCCTGGTTATGAGTGTGTTTAACTTTGTTTTTTATTTATATATTTTTTAAAAGCTTTTCTGTTTCCTGTATCATTCAACCTCACTATTGATTCCCTCTAGAAAAGTCATATTAAAGCCAAACATTGTATTTACTTGCTATGATGTCATAATAAACTTTCTCGATCTGGTGAATTCACACATACTGTTAGAAGTTGATAACAATAATCTCTCAGTTTATGCGATCAATGGAACTTTTGATTCTGTCGATCATTGCTACAATTAGT

Coding sequences of Glyma01g44350

Limit To All Plant Sequences

>Glyma01g44350.1   sequence type=CDS   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTGTTATGCTGTTATTGCACGATTTTTTCAAGTATATCAGATATTTGCTGGGGATTAAGTGAAAAAGACTCAATGGTAAACCCAAAAGTGTCTACTCAACCAAAAATATGCTACAGGCCTATTCAACCTTCTGACCTGGACATTTTAGAGCATATCCATTGCAGATTATTTCCCATCAGGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTCATTGGATTTGTAACAGCACGAATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATATGCTTGGATATGACTCGGCTAAATCTGACCAAACTCTAGTCTATGTTCTGACGCTGGGAGTAGTGGAAGCATATAGAAGTCTTGGAATAGCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACATGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAATTTGTACAAGAAAATGTCTTTCAAGTGTGTGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGTGGCAGCAAGGCTGTGCAAGAACGGAGGCAGGAAGATCTCAAGGCGGGCAAAGTGTAAAGAAAGTCATTCTCTTGTGTCAGCAACACCCAACAAAAGAAACGTGGCAGTCGAGTGTCCTGGTTATGAGTGTGTTTAA

>Glyma01g44350.3   sequence type=CDS   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACCCAAAAGTGTCTACTCAACCAAAAATATGCTACAGGCCTATTCAACCTTCTGACCTGGACATTTTAGAGCATATCCATTGCAGATTATTTCCCATCAGGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTCATTGGATTTGTAACAGCACGAATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATATGCTTGGATATGACTCGGCTAAATCTGACCAAACTCTAGTCTATGTTCTGACGCTGGGAGTAGTGGAAGCATATAGAAGTCTTGGAATAGCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACATGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAATTTGTACAAGAAAATGTCTTTCAAGTGTGTGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGTGGCAGCAAGGCTGTGCAAGAACGGAGGCAGGAAGATCTCAAGGCGGGCAAAGTGTAAAGAAAGTCATTCTCTTGTGTCAGCAACACCCAACAAAAGAAACGTGGCAGTCGAGTGTCCTGGTTATGAGTGTGTTTAA

>Glyma01g44350.4   sequence type=CDS   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAACCCAAAAGTGTCTACTCAACCAAAAATATGCTACAGGCCTATTCAACCTTCTGACCTGGACATTTTAGAGCATATCCATTGCAGATTATTTCCCATCAGGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTCATTGGATTTGTAACAGCACGAATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATATGCTTGGATATGACTCGGCTAAATCTGACCAAACTCTAGTCTATGTTCTGACGCTGGGAGTAGTGGAAGCATATAGAAGTCTTGGAATAGCTTCTTCTCTGATTCGGGAGGTCATAAAATATGCTTCAAGTATTCCAACATGCCGAGCTGTCTACTTGCATGTAATCTCTTACAATAACCCTGCAATCAATTTGTACAAGAAAATGTCTTTCAAGTGTGTGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGTGGCAGCAAGGCTGTGCAAGAACGGAGGCAGGAAGATCTCAAGGCGGGCAAAGTGTAAAGAAAGTCATTCTCTTGTGTCAGCAACACCCAACAAAAGAAACGTGGCAGTCGAGTGTCCTGGTTATGAGTGTGTTTAA

Predicted protein sequences of Glyma01g44350

Limit To All Plant Sequences

>Glyma01g44350.1   sequence type=predicted peptide   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVLCCYCTIFSSISDICWGLSEKDSMVNPKVSTQPKICYRPIQPSDLDILEHIHCRLFPIRYESTFFHDVVNGRDIVSWGAVDSSRSDGQSDELIGFVTARIVLAKESEIVDMLGYDSAKSDQTLVYVLTLGVVEAYRSLGIASSLIREVIKYASSIPTCRAVYLHVISYNNPAINLYKKMSFKCVRRLQGFYLINGQHYDSFLFLYYVNGGQSPCSPLEFLTAIVSYMKSGFNSVAARLCKNGGRKISRRAKCKESHSLVSATPNKRNVAVECPGYECV*

>Glyma01g44350.3   sequence type=predicted peptide   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPKVSTQPKICYRPIQPSDLDILEHIHCRLFPIRYESTFFHDVVNGRDIVSWGAVDSSRSDGQSDELIGFVTARIVLAKESEIVDMLGYDSAKSDQTLVYVLTLGVVEAYRSLGIASSLIREVIKYASSIPTCRAVYLHVISYNNPAINLYKKMSFKCVRRLQGFYLINGQHYDSFLFLYYVNGGQSPCSPLEFLTAIVSYMKSGFNSVAARLCKNGGRKISRRAKCKESHSLVSATPNKRNVAVECPGYECV*

>Glyma01g44350.4   sequence type=predicted peptide   gene model=Glyma01g44350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPKVSTQPKICYRPIQPSDLDILEHIHCRLFPIRYESTFFHDVVNGRDIVSWGAVDSSRSDGQSDELIGFVTARIVLAKESEIVDMLGYDSAKSDQTLVYVLTLGVVEAYRSLGIASSLIREVIKYASSIPTCRAVYLHVISYNNPAINLYKKMSFKCVRRLQGFYLINGQHYDSFLFLYYVNGGQSPCSPLEFLTAIVSYMKSGFNSVAARLCKNGGRKISRRAKCKESHSLVSATPNKRNVAVECPGYECV*

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