Glyma01g44260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g44260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g44260): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g44260

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54967588
stop:	54970765
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27330	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:11695350-11696563 REVERSE LENGTH=116	SoyBase	E_val: 3.00E-25	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24622	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24622:SF32	Panther	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7IZG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold-inducible RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7IZG4_MEDTR	SoyBase	E_val: 1.00E-39	ISS
UniRef100_I1JAL8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAL8_SOYBN	SoyBase	E_val: 2.00E-53	ISS

Expression Patterns of Glyma01g44260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g44260 not represented in the dataset	Glyma01g44260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44260

Paralog	Evidence	Comments
Glyma11g01246	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g232300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44260

Limit To All Plant Sequences

>Glyma01g44260.4   sequence type=transcript   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGTAATTGTGTTAAAGCATTTGTTTTGTTGAGCGAGAGTACCCTTGAAAATCAGAAGCGTGGGTGGATTTCCTCCAAGTCGTTGCTGTTCTCACTTGTCTCCAATTGCAATCGGCCTTTAATTTGCAGGTTTGGCCCATGAACTTCTTTGCTTTTGCTAATTAGTTGAGAACTGTGCTCCCCAATTTAACATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGATGGTTGAGGCTCAATGAAGATTTGCACAAGTATTAAACAATCATAGCCTTGATATATAAGGAGGGAAGGAGCCACATCTACTCCAAGCGCTTCTTGATAATAATGGTCATTTTGTTTTCACTGTAAAACGTTAATTAAACGGTCACACCAATCAACAACTACTTGTTGCAAAAACTATCCAGTTGTTATCTATATACTATATCTCTTTGGAATTCATACTCATTTTTGCTTTTGAATGTTAAGTGTGTGTATGGGTGATGGTATGCAAATTTAATTTAGGATGAGCTTGATTTGA

>Glyma01g44260.6   sequence type=transcript   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGTAATTGTGTTAAAGCATTTGTTTTGTTGAGCGAGAGTACCCTTGAAAATCAGAAGCGTGGGTGGATTTCCTCCAAGTCGTTGCTGTTCTCACTTGTCTCCAATTGCAATCGGTTTGGCCCATGAACTTCTTTGCTTTTGCTAATTAGTTGAGAACTGTGCTCCCCAATTTAACATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGATGGTTGAGGCTCAATGAAGATTTGCACAAGTATTAAACAATCATAGCCTTGATATATAAGGAGGGAAGGAGCCACATCTACTCCAAGCGCTTCTTGATAATAATGGTCATTTTGTTTTCACTGTAAAACGTTAATTAAACGGTCACACCAATCAACAACTACTTGTTGCAAAAACTATCCAGTTGTTATCTATATACTATATCTCTTTGGAATTCATACTCATTTTTGCTTTTGAATGTTAAGTGTGTGTATGGGTGATGGTATGCAAATTTAATTTAGGATGAGCTTGATTTGA

>Glyma01g44260.7   sequence type=transcript   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAGTTGGTTGAACTAATTGATATTGATATTAAATTAGACATTGTGTAATTGTGTTAAAGCATTTGTTTTGTTGAGCGAGAGTACCCTTGAAAATCAGAAGCGTGGGTGGATTTCCTCCAAGTCGTTGCTGTTCTCACTTGTCTCCAATTGCAATCGGCTACAACTATGGAGCCCCATAAGGCCTTTAATTTGCAGGTTTGGCCCATGAACTTCTTTGCTTTTGCTAATTAGTTGAGAACTGTGCTCCCCAATTTAACATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGATGGTTGAGGCTCAATGAAGATTTGCACAAGTATTAAACAATCATAGCCTTGATATATAAGGAGGGAAGGAGCCACATCTACTCCAAGCGCTTCTTGATAATAATGGTCATTTTGTTTTCACTGTAAAACGTTAATTAAACGGTCACACCAATCAACAACTACTTGTTGCAAAAACTATCCAGTTGTTATCTATATACTATATCTCTTTGGAATTCATACTCATTTTTGCTTTTGAATGTTAAGTGTGTGTATGGGTGATGGTATGCAAATTTAATTTAGGATGAGCTTGATTTGATTTTGTTTAATCA

>Glyma01g44260.8   sequence type=transcript   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAGTTGGTTGAACTAATTGATATTGATATTAAATTAGACATTGTGTAATTGTGTTAAAGCATTTGTTTTGTTGAGCGAGAGTACCCTTGAAAATCAGAAGCGTGGGTGGATTTCCTCCAAGTCGTTGCTGTTCTCACTTGTCTCCAATTGCAATCGGCTACAACTATGGAGCCCCATAAGGCCTTTAATTTGCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGATGGTTGAGGCTCAATGAAGATTTGCACAAGTATTAAACAATCATAGCCTTGATATATAAGGAGGGAAGGAGCCACATCTACTCCAAGCGCTTCTTGATAATAATGGTCATTTTGTTTTCACTGTAAAACGTTAATTAAACGGTCACACCAATCAACAACTACTTGTTGCAAAAACTATCCAGTTGTTATCTATATACTATATCTCTTTGGAATTCATACTCATTTTTGCTTTTGAATGTTAAGTGTGTGTATGGGTGATGGTATGCAAATTTAATTTAGGATGAGCTTGATTTGATTTTGTTTAATCA

Coding sequences of Glyma01g44260

Limit To All Plant Sequences

>Glyma01g44260.2   sequence type=CDS   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA

>Glyma01g44260.4   sequence type=CDS   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA

>Glyma01g44260.6   sequence type=CDS   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA

>Glyma01g44260.7   sequence type=CDS   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTATGAGAGAATTTTCCAGAGTCATACTATCTCACTTAAAAAAACCCCATGCTTCTCCATCTCAACTTCTCTTCCTCCGAACAATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA

>Glyma01g44260.8   sequence type=CDS   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCCAAGGTTTTTGTTAAAGGTCTAGCATTTTCTACGACAGAGGAGGAATTAGCCAAAGCTTTTTCTCAATACGGCAGTGTCCTGAAGGCTAATATAATACTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTGCTAAAGAGGAAGAAGCATGCAAGGCACAGATTGACATGAACGGAAAGATATTACATGGACGAGTTATATATGTAGACGTGCAATTGCCTAACAAGTGA

Predicted protein sequences of Glyma01g44260

Limit To All Plant Sequences

>Glyma01g44260.2   sequence type=predicted peptide   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK*

>Glyma01g44260.4   sequence type=predicted peptide   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMREFSRVILSHLKKPHASPSQLLFLRTMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK*

>Glyma01g44260.6   sequence type=predicted peptide   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMREFSRVILSHLKKPHASPSQLLFLRTMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK*

>Glyma01g44260.7   sequence type=predicted peptide   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMREFSRVILSHLKKPHASPSQLLFLRTMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK*

>Glyma01g44260.8   sequence type=predicted peptide   gene model=Glyma01g44260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVTFAKEEEACKAQIDMNGKILHGRVIYVDVQLPNK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain