Report for Sequence Feature Glyma01g44230
Feature Type: gene_model
Chromosome: Gm01
Start: 54958831
stop: 54959717
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g44230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G71520 AT
Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143
SoyBase E_val: 6.00E-37 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PF00847 PFAM
AP2 domain
JGI ISS
UniRef100_G7K978 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor ERF019 n=1 Tax=Medicago truncatula RepID=G7K978_MEDTR
SoyBase E_val: 1.00E-58 ISS
UniRef100_UPI0002336D9C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002336D9C related cluster n=1 Tax=unknown RepID=UPI0002336D9C
SoyBase E_val: 2.00E-126 ISS
Expression Patterns of Glyma01g44230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g44230
Paralog Evidence Comments
Glyma11g01700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g44230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g232000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g44230
Coding sequences of Glyma01g44230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g44230.2 sequence type=CDS gene model=Glyma01g44230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAGTAGTAGTTCAGCCAAGAAGTTGAAGGGAGTTCGGCGTCGGAAATGGGGAAAGTGGGTGTCGGAGATTCGTGTTCCGGGCACGCAAGGGCGTCTCTGGTTGGGAACCTACGCCACGCAGGAGGCTGCCGCGGTTGCTCACGACGTTGCCGTTTACTGTCTGAGGAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAGACCTTGTCTTCGTTCAGCCTTCAGCTCAGGGACATGTCTCCGAGGTCTGTGCAGAAGGTGGCTTCCGATATTGGCATGGACGTTGATGCCAGAAACATTCTTGCTGGTAAAACTTCAACGGTGGTGGCGGAAACTAATTACGAGAGTGATGAGAGGAGTAGAACTGTGTGTGATGTTGATGGAGGTGGTGCTGATGAGCATTCTGATGTGTTTCGGTGGGATGCTGTGGGGAATGAGGATGGAGGGTCTTGGCATGGAAGTGGTGGAGATTGTAAAGAAAGGGATCAGGCCTTGAGCATTTCCATTGAAGATTATCTTGAGCTGTCTTAG
Predicted protein sequences of Glyma01g44230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g44230.2 sequence type=predicted peptide gene model=Glyma01g44230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRSSSSAKKLKGVRRRKWGKWVSEIRVPGTQGRLWLGTYATQEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSFSLQLRDMSPRSVQKVASDIGMDVDARNILAGKTSTVVAETNYESDERSRTVCDVDGGGADEHSDVFRWDAVGNEDGGSWHGSGGDCKERDQALSISIEDYLELS*