SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71500 | AT | Annotation by Michelle Graham. TAIR10: Rieske (2Fe-2S) domain-containing protein | chr1:26936084-26937331 FORWARD LENGTH=287 | SoyBase | E_val: 9.00E-125 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0051537 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding | SoyBase | N/A | ISS |
| PTHR21496 | Panther | FERREDOXIN-RELATED | JGI | ISS | |
| UniRef100_B9SPX1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9SPX1_RICCO | SoyBase | E_val: 2.00E-136 | ISS |
| UniRef100_I1JAL1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAL1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g44220 not represented in the dataset |
Glyma01g44220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g231900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g44220.2 sequence type=CDS gene model=Glyma01g44220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAATGGGATGGTTAAATTTATTTAGAATAGAGATGTGGCTAAAGAGAGTTCATTATCCAGTTGTGTGGACTTTAGCCATCCACAGATGCAAAGGCAATGCAGAGGCAGACAAAGCAAGAGGGTGCTTCTTCACTTTCTCTCTCCAACAACTTTCACTCCCAAGCTCCATGGCCGCAAACCTTTTACCCCTTTCAATTTCATGCTCCTCTAAAACCCACATTCTCTGTCTTCCCTCCCCTCCCAAACCCCTCTTTCTCTGCCGCCACTCTCTGCTCCGTTACCGTTCCACTCCGCGACTCACATGTAAGGCAGCCCAAGTTTCGGTCGCCGAAGAGTCGTCGGCGTCCGGCGACAACTGGGTTCCGGTGGTGCCTCTGTCTGCTCTGCCGAAGGGGGAGCGGCGCGTGATCATTCAGGACGGCGAGACCATACTGCTGCTTTGGTACAAAGACCAAGTTTTCGCTATTGAGAATAGGTCCCCTGCTGAAGGCGCCTATACTGAAGGCTTGCTCAATGCCAAGCTCACCCAGGATGGGTGCATAGTTTGCCCATCAACTGATAGCACATTTGATCTGCGAACGGGAGATATCAAGGAATGGTATCCAAAAAATCCTGTTCTGAGAGTTCTCACGCCCGCTTTGAGGAAACTCTTTATCTATCCTGTGAAAACAGATGAACAGAATATTTATATCAGCATAAGAGGAGGTGTGAGATCTGATGCTTCTGCTGAAATTGTCTTTAGTGGGAAGGCTCAACCTGGTTTTACAGCAACTGATGTCAATGTTGATGAGGTTAAAATGATCGTTGATGAGGATCAAGAGGGATTTGGTTTTACTGGGAAGAACGAAATAATAAACGGGAGAGCAGCTGTTATTGGTTTCCTCCTGTTGTTGGATTTTGAGCTTTTAACAGGTAAGGGTCTTTTAAAGGGGACAGGCTTCTTGGACTTCTTATACTCCGTCACTAATGCTTTCAATTAG
>Glyma01g44220.2 sequence type=predicted peptide gene model=Glyma01g44220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRMGWLNLFRIEMWLKRVHYPVVWTLAIHRCKGNAEADKARGCFFTFSLQQLSLPSSMAANLLPLSISCSSKTHILCLPSPPKPLFLCRHSLLRYRSTPRLTCKAAQVSVAEESSASGDNWVPVVPLSALPKGERRVIIQDGETILLLWYKDQVFAIENRSPAEGAYTEGLLNAKLTQDGCIVCPSTDSTFDLRTGDIKEWYPKNPVLRVLTPALRKLFIYPVKTDEQNIYISIRGGVRSDASAEIVFSGKAQPGFTATDVNVDEVKMIVDEDQEGFGFTGKNEIINGRAAVIGFLLLLDFELLTGKGLLKGTGFLDFLYSVTNAFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
