SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25340 | AT | Annotation by Michelle Graham. TAIR10: FK506 BINDING PROTEIN 53 | chr4:12959657-12962632 REVERSE LENGTH=477 | SoyBase | E_val: 5.00E-113 | ISS |
| GO:0000412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone peptidyl-prolyl isomerization | SoyBase | N/A | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006334 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleosome assembly | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0018208 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| GO:0005528 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FK506 binding | SoyBase | N/A | ISS |
| GO:0042393 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone binding | SoyBase | N/A | ISS |
| KOG0552 | KOG | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR10516 | Panther | FK506 BINDING PROTEIN | JGI | ISS | |
| PF00254 | PFAM | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| UniRef100_I1JAK5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JAK5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JAK5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1JAK5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g44160 not represented in the dataset |
Glyma01g44160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g01660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g231400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g44160.1 sequence type=CDS gene model=Glyma01g44160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTCTGGGGGATTGAAGTGAAACCTGGCAAACCGTGTCCTTATCACGCTGACAATGTGCGAGGGAAGCTTCATGTTACTCAGGCTACTCTAGGCATTGGCTCATCATCGGAGAAAAGCATTCTTCAGTGCTCTTCTGGACACAAAAGTCCAGTTTTCTTGTGTTCATTGCTACCAGATAAGGTTGAGTCATGCCCTTTGAATCTTGAGTTTGACGCAGATGACTTAGTGGCATTCTCGGTTGTTGGCTCACGAAGCATCCACCTTTCAGGTTATTTTGCGGATGATGATGGGGATGATCTTAGGGATGACTATGAATATGATTCATGGGGAGAGGATATTGAAGGAACTGAGTCAGAGGAGTCGTCTGAATATGATAGTGAAGATGGATATGCTGATGACTTTATTGTTGATAGTGATACTGACATGTACCCGTCTTCGCCAATCCCAAATAGTGGAGTTGTAATTGAGGAAATAATGGATGATGATAAACCCAAAAATGGAGATGATCCAACTAAGAAATTAAAGAAAAAGAAGCATGTAGCTCAGTTGAAAGAGAAAGACAACAAAAGTTCTGAGCTTCCAATTGTTGCTAAGGGTGATACTGACCTTGTTGTGGAAAGTGAAGATGAAGATGGCTTTCCAATTTCCATTGCAGAGAAAGGTGTGTCTGTCTCTAAGACAGAAGCAGAAATGAAAGGAGAACAAGCACGTAAGAAAACTGAGAAAGCCAACAAGAAGGAAAAAGATGTTGGTCATTCTGCTAGTGTAAAACGAAAAGTTGATAGTGCTGATGAAGATGAGCCTCAGGATGGGAAAAAGAAGAAGAAAAGAAACAAGTTGAAAGATCATATTAAAGGGGGAAGTGATCATGCATCTGACAATAGCAATGAGAAAAAGGTTACTGAACCAGATGAAAAACATGCCGAGGATGTTAAAACTTCAACCAAACTGAGTGATGTTTCTCATGCAAAGGATGAAGATGGTGGAAAGCTATCCAATAACGAGGTCCTTGTTGAGAAGAAAATCAAGAAGAAAAACAAGAAAAAGACCAAAGAGTCTGAAGGGGAAGCTGCCGCAAATCAAATTACTACAACTGCTGAAAAACAGAATTTGTCCACAGAGAAAAAGGGGAAGAAACAAACTGAAACCAAGCCATCACAAGTGAGAACTTTTCCAAATGGATTGATTATAGAGGAGGTGTTTATGGGTAAACCTGATGGCAAAAAAGCTGCTCCTGGAAAGAAGGTTAGTGTTAAATATATTGGCAAACTGCAAAAAGATGGGAAAATATTTGACTCAAATGTGGGAAGAGCACCCTTTAAATTTCGCCTGGGTGTAGGACAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGAATTGGGGACAAACGAAGGATCACAATTCCACCGTCTATGGGATACGCGGACAAACGCGTTGGCAGTATACCACCAAGTTCGTGGCTTGTATTTGATGTGGAGTTGGTTGATGTTGGTCGCTGA
>Glyma01g44160.1 sequence type=predicted peptide gene model=Glyma01g44160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFWGIEVKPGKPCPYHADNVRGKLHVTQATLGIGSSSEKSILQCSSGHKSPVFLCSLLPDKVESCPLNLEFDADDLVAFSVVGSRSIHLSGYFADDDGDDLRDDYEYDSWGEDIEGTESEESSEYDSEDGYADDFIVDSDTDMYPSSPIPNSGVVIEEIMDDDKPKNGDDPTKKLKKKKHVAQLKEKDNKSSELPIVAKGDTDLVVESEDEDGFPISIAEKGVSVSKTEAEMKGEQARKKTEKANKKEKDVGHSASVKRKVDSADEDEPQDGKKKKKRNKLKDHIKGGSDHASDNSNEKKVTEPDEKHAEDVKTSTKLSDVSHAKDEDGGKLSNNEVLVEKKIKKKNKKKTKESEGEAAANQITTTAEKQNLSTEKKGKKQTETKPSQVRTFPNGLIIEEVFMGKPDGKKAAPGKKVSVKYIGKLQKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKRVGSIPPSSWLVFDVELVDVGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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