Glyma01g44110 - SoyBase

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Report for Sequence Feature Glyma01g44110

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54887264
stop:	54891304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10050	AT	Annotation by Michelle Graham. TAIR10: esterase/lipase/thioesterase family protein \| chr4:6284620-6287186 REVERSE LENGTH=350	SoyBase	E_val: 2.00E-105	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR14189	Panther	PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED	JGI		ISS
UniRef100_I1LG43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase methylesterase 1 n=1 Tax=Glycine max RepID=I1LG43_SOYBN	SoyBase	E_val: 3.00E-122	ISS
UniRef100_UPI0002336D98	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336D98 related cluster n=1 Tax=unknown RepID=UPI0002336D98	SoyBase	E_val: 6.00E-136	ISS

Expression Patterns of Glyma01g44110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44110

Paralog	Evidence	Comments
Glyma11g01610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g230800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g44110

Limit To All Plant Sequences

>Glyma01g44110.2   sequence type=transcript   gene model=Glyma01g44110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCCACCTTGGCTGGGTTGCTTGTTGTGGATGTTGTAGAGGGAACAGCAATGACTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACGTTAAAGTATGATGATTCAAAGAAATGCTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCCGTTCCAAAGCTGTTGTTATTAGCAGGAACAAGAATGCCCAGTTGGATGTGTGGTGAGTGGTCACACAAGAAAGGATAAGATACAGTGTAAGACGAGATATT

Coding sequences of Glyma01g44110

Limit To All Plant Sequences

>Glyma01g44110.1   sequence type=CDS   gene model=Glyma01g44110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCCACCTTGGCTGGGTTGCTTGTTGTGGATGTTGTAGAGGGAACAGCAATGACTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACGTTAAAGTATGATGATTCAAAGAAATGCTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCCGTTCCAAAGCTGTTGTTATTAGCAGGAACAAGAATGCCCAGTTGGATGTGTGGTCACACAATTGGTCAAATGCAAGGGAAGTTTCAAATGGCAGTTGTAAGGCATACAGGGCATGCTATTCAGGAAGATGTACCTGATGAATTTGCAACTCTGATTGTCAACTTCATTTCTCGTAACCAAATAGGCCCTCATGAAATTGAGATACCTGGCCCACGCAAGCCAGCCTTTTCAAAACCTTGA

>Glyma01g44110.2   sequence type=CDS   gene model=Glyma01g44110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGATCAATTGCTGTGCATGTTGCTGCAAGGAGATCATTGTCCACCTTGGCTGGGTTGCTTGTTGTGGATGTTGTAGAGGGAACAGCAATGACTTCACTAATTCATATGCAGAAAATCCTATCAAGCAGGATGCAACATTTTTCAAGCATTGAAAAAGCTATTGAATGGAGTGTCAGGGGTGGCTCTTTAAGAAATATTGATTCTGCTCGTGTATCAATCCCTGCCACGTTAAAGTATGATGATTCAAAGAAATGCTATCTTTACCGAACTGAGCTGGAAAAGACTGAACAATATTGGAAAGGCTGGTATGAAGGCCTCTCAGATAAATTTTTGTCATGTCCCGTTCCAAAGCTGTTGTTATTAGCAGGAACAAGAATGCCCAGTTGGATGTGTGGTGAGTGGTCACACAAGAAAGGATAA

Predicted protein sequences of Glyma01g44110

Limit To All Plant Sequences

>Glyma01g44110.1   sequence type=predicted peptide   gene model=Glyma01g44110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSIAVHVAARRSLSTLAGLLVVDVVEGTAMTSLIHMQKILSSRMQHFSSIEKAIEWSVRGGSLRNIDSARVSIPATLKYDDSKKCYLYRTELEKTEQYWKGWYEGLSDKFLSCPVPKLLLLAGTRMPSWMCGHTIGQMQGKFQMAVVRHTGHAIQEDVPDEFATLIVNFISRNQIGPHEIEIPGPRKPAFSKP*

>Glyma01g44110.2   sequence type=predicted peptide   gene model=Glyma01g44110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSIAVHVAARRSLSTLAGLLVVDVVEGTAMTSLIHMQKILSSRMQHFSSIEKAIEWSVRGGSLRNIDSARVSIPATLKYDDSKKCYLYRTELEKTEQYWKGWYEGLSDKFLSCPVPKLLLLAGTRMPSWMCGEWSHKKG*

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