Glyma01g44080 - SoyBase

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Report for Sequence Feature Glyma01g44080

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54873336
stop:	54876744
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42310	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr5:16915860-16918238 FORWARD LENGTH=709	SoyBase	E_val: 2.00E-112	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9S1X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S1X9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JAJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JAJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g44080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44080

Paralog	Evidence	Comments
Glyma11g01550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g230600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g44080

Limit To All Plant Sequences

>Glyma01g44080.2   sequence type=CDS   gene model=Glyma01g44080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTCACTCCGTTTTCCGCTCTATGCAAATTTCACTGTCATACAATCACGGTAACCCTCTTCTACGCATCCCTCGTGCAATTGTTACCCAATGTAGTAAAAAATCCAACTTTCTTAAGTTCCCCAATCGCTGGGTTCGAAACAAGGGTGTTAAAGAAGTGGGTTCAGAATTTGATAGCAAAAGCAAAACAATGCTTTTTAAGATTCCTGATATTGGGGAAAATGAAGAACTCTCCAGTAATTTGTGCAGCCAATTTATCTGTGAATGTTGCAAAGAAGGAGACTTGGACAGAGCTATGTCTCTTCTATCTCAAATGGAAGCTAAGGGGTTTCACCTCAGTTCCACAGCTTATGCTTGTCTTATTGAAGCCCTTGGAAATGTTGGAAGGACTTCAGAGGCTGATATGTTGTTCAAGGAAATGATTTGTGATGGCTATAAACCCAAACTGAATTTTTACACCAGTTTGCTTAGAGGGTTTTTGAAGAAAGGTCTGTTAGGACTTGCAAATGGGGTCTTGAAGGAAATGGATTACTCAGGCATATGGAGGAGTAAAGAGACATATCAGATCTTTCTGGATTACTATGTTGGTGCTGGAAGGTTGGAAGATACTTGGTCAACAATCAATGTGATGAAGCAAAAGGGGTTTCCACTTAACTCATTTGTGTATAGCAAGGTTGTTGGGATTTATAGGGACAATGGGATGTGGAAGAAAGCAATAGAGGTTTTGGAAGAGATTAGGGAGAGGGGGATTTCTTTAGACACTCATATTTGTAACAGTATTATTGATACCTTTGGCAAATATGGCGAATTAGATGAGGCGTTGAAATTGTTCAAGAAAATGCAAAAAGAAGGTGTGAGGCCAAACATAGTGACATGGAATTCACTCATTAAGTGGCACTGCAAAGAAGGTGATTTCATGAAATCCTTTCATTTGTTTACTGATATGCAAGAGCAAGGATTATATCCAGACCCTAAGATCTTTGTCACCATCATTAGCTGCATGGGGGAGCAGGGAAAGTGGGGCATAATAAAGAAATATTTTGAAAGCATGAAAATCAGGGGAAACAAAGAATATGGGGCTGTTTATGCTGTTTTGGTTGATATATATGGACAATATGGGAAATTTCAGAATGCCAGGGAGTGTGTACAAGCACTAAAGTCCGAAGGTGTGCTAGTTTCACCGAGCATTTTTTGTGTGTTAGCAAATGCTTATGCTCAGCAGGGCTTGTGTGAGCAGGTCATTATGGTGCTGCAGATTATGGAAGCAGAGGGAATTGAACCAAACATTGTCATGCTCAATATGTTAATCAATGCATTTGGTAATGCTGGAAGATATATGGAAGCAATGTCTGTTTATCATCATATAAAAGAAAGTGGTGTTAGCCCTGATGTGGTCACCTACACTACACTTATGAAGGCATTTATAAGGGCCAAAAAGTTCGATGAGGTTCCCATTATTTACAAGGAAATGGAGAATGATAGATGCACTCCTGATAGAAAAGCTAGACAGATGTTACAAGTTGCTTTAATGGTGCTTGAACGAATGAACTCATTACAAATATATTAA

Predicted protein sequences of Glyma01g44080

Limit To All Plant Sequences

>Glyma01g44080.2   sequence type=predicted peptide   gene model=Glyma01g44080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIHSVFRSMQISLSYNHGNPLLRIPRAIVTQCSKKSNFLKFPNRWVRNKGVKEVGSEFDSKSKTMLFKIPDIGENEELSSNLCSQFICECCKEGDLDRAMSLLSQMEAKGFHLSSTAYACLIEALGNVGRTSEADMLFKEMICDGYKPKLNFYTSLLRGFLKKGLLGLANGVLKEMDYSGIWRSKETYQIFLDYYVGAGRLEDTWSTINVMKQKGFPLNSFVYSKVVGIYRDNGMWKKAIEVLEEIRERGISLDTHICNSIIDTFGKYGELDEALKLFKKMQKEGVRPNIVTWNSLIKWHCKEGDFMKSFHLFTDMQEQGLYPDPKIFVTIISCMGEQGKWGIIKKYFESMKIRGNKEYGAVYAVLVDIYGQYGKFQNARECVQALKSEGVLVSPSIFCVLANAYAQQGLCEQVIMVLQIMEAEGIEPNIVMLNMLINAFGNAGRYMEAMSVYHHIKESGVSPDVVTYTTLMKAFIRAKKFDEVPIIYKEMENDRCTPDRKARQMLQVALMVLERMNSLQIY*

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