Glyma01g44010 - SoyBase

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Report for Sequence Feature Glyma01g44010

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54832443
stop:	54837234
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g44010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G33250	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF604) \| chr1:12057524-12059346 REVERSE LENGTH=548	SoyBase	E_val: 0	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG2246	KOG	Galactosyltransferases	JGI		ISS
PTHR10811	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE	JGI		ISS
PTHR10811:SF5	Panther	RADICAL FRINGE	JGI		ISS
PF04646	PFAM	Protein of unknown function, DUF604	JGI		ISS
UniRef100_G7K6K0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7K6K0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JAJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g44010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g44010

Paralog	Evidence	Comments
Glyma11g01480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g44010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g229900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g44010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g44010

Limit To All Plant Sequences

>Glyma01g44010.1   sequence type=CDS   gene model=Glyma01g44010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACATTGGAATGATGGTGATGATGACTCGAGCATTGAAGACCATTATGTCATCCTATCATGACTATGGCAAGAATTCCCGTTTATGTCCTTTGCCTATCAGTCAATCCAGAAGCCGTCAGTGGCGCCAATGCCGCATTGGAACCTTCGCTGTAGCCATAGCAGCACTTCTCATATCTACCACTGCTTGGCTTTCCCTTGTCTTCTCTGATGCAACTACCTGTTGCTTTCATCACTTAAAGGATTGGGAAAGTAGCCCCCACTTTTTCAATTGGAAGAAGTGCATCTCTCATCGTCTTGCAAAAGTAACACCTCCACCAGCTCTCCAATATGAGACCGTGAATGCTCATCTTCATAATGGTAGCAGGACTGTTGAACAGGAAGGCTTGTCACTTAAACATATTGTTTTTGGCATAGCAGGATCATCTCAGCTTTGGAAACGGAGGAAGGAGTATGTCAAATTGTGGTGGCGTCCTAATGACATGCGTGGCCATGTGTGGTTAGAGGAACAAGTGCTTGAAGAACCTGGAGATGATTTATTGCCCCCTATCATGATTTCTGAAGACATCTCATATTTCCGCTACACTAATCCCATTGGTCACCCTTCTGGCCTCCGGATTTCTCGCATTGTCAGAGAGAGCTTTTGCCTTGGCCTCTCTGATGTGCGCTGGTTTGTCCTCTGTGATGATGATACCATCTTCAATGTGAATAATCTAGTTGATGTTCTCAGCAAGTATAATTCTTCTGAAATGATTTACATAGGTAGCCCCTCAGAGAGCCATTCGGCAAATACCTATTTTAGTCATTCAATGGCCTTTGGCGGTGGTGGGATTGCAATAAGTCATTCACTTGCAAAGGCTCTCTCTGAGATACTTGACGAATGCATTGAGCGATATCCCAAGCTTTATGGTAGTGATGATCGACTGCATGCCTGCATCACTGAACTTGGCATTCCACTGACATGGGAGCATGGTTTTCATCAGTGGGATATAAGAGGTGACGCTCATGGTCTTCTATCCTCTCACCCAATAGCACCATTTGTATCAATTCATCATGTTGAAGCTGTTAATCCCTTTTATCCTGGCCTGAGCTCTTTGGACAGCCTGAAACTTTTTACAAATGCCATGAAAGCCGATCCCAAAAGCTTTTTGCAGCGTTCAATATGTTACGACCACGCACGGCATCTAACATTTTCAGTGTCACTTGGTTATGTTGTTCAAGTCCTGCCTAACATTGTTTTTCCTCAAGAACTGGAGCGCTCTGAAAGGACATACTCTGCTTGGAATGGTATTAGTCAAACGAATGAATTTGATTTTGATGCCAGGGAACCATACAAATCTGTTTGTAAAGGGCCCACTCGATTCTTCTTGAAAGATACTAGAAGAGAGGGTAATGCTTCTTGGGGTTCATATGTTCGGGGTAGAGATAAAGATGATTTCAAAAAGAGAATTTTATGCTTTCCTCACTTCCCCCCTCTGCACAATGTGGGAGAGATCCAGGTAGCAGTGCAACATTTGAGCAAGAATTGGCATCTGGTTCCACGACGTCTCTGTTGCCGACAAAGCCAAGCTGGCAAAGAAATACTCCAAATCTCAGTTGGAGAATGTGGGAAGGGAACTTTTAGCTCTGTCTACTGA

Predicted protein sequences of Glyma01g44010

Limit To All Plant Sequences

>Glyma01g44010.1   sequence type=predicted peptide   gene model=Glyma01g44010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHIGMMVMMTRALKTIMSSYHDYGKNSRLCPLPISQSRSRQWRQCRIGTFAVAIAALLISTTAWLSLVFSDATTCCFHHLKDWESSPHFFNWKKCISHRLAKVTPPPALQYETVNAHLHNGSRTVEQEGLSLKHIVFGIAGSSQLWKRRKEYVKLWWRPNDMRGHVWLEEQVLEEPGDDLLPPIMISEDISYFRYTNPIGHPSGLRISRIVRESFCLGLSDVRWFVLCDDDTIFNVNNLVDVLSKYNSSEMIYIGSPSESHSANTYFSHSMAFGGGGIAISHSLAKALSEILDECIERYPKLYGSDDRLHACITELGIPLTWEHGFHQWDIRGDAHGLLSSHPIAPFVSIHHVEAVNPFYPGLSSLDSLKLFTNAMKADPKSFLQRSICYDHARHLTFSVSLGYVVQVLPNIVFPQELERSERTYSAWNGISQTNEFDFDAREPYKSVCKGPTRFFLKDTRREGNASWGSYVRGRDKDDFKKRILCFPHFPPLHNVGEIQVAVQHLSKNWHLVPRRLCCRQSQAGKEILQISVGECGKGTFSSVY*

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