Report for Sequence Feature Glyma01g43990
Feature Type: gene_model
Chromosome: Gm01
Start: 54822803
stop: 54826570
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g43990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G28060 AT
Annotation by Michelle Graham. TAIR10: Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2769
KOG
Putative u4/u6 small nuclear ribonucleoprotein
JGI ISS
PTHR14212 Panther
U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED
JGI ISS
PF06544 PFAM
Protein of unknown function (DUF1115)
JGI ISS
PF08572 PFAM
pre-mRNA processing factor 3 (PRP3)
JGI ISS
UniRef100_G7IF06 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: U4/U6 small nuclear ribonucleoprotein Prp3 n=1 Tax=Medicago truncatula RepID=G7IF06_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JAI8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAI8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g43990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g43990
Paralog Evidence Comments
Glyma11g01460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g43990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g229700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g43990
Coding sequences of Glyma01g43990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g43990.1 sequence type=CDS gene model=Glyma01g43990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGACAGAGTCAAATCTGAAAAGAGAAGCAGAGATCGACACTTGGAACGTGACGACAAATACCATCGCGATTCTGATGATCACCGCCGTCATCGATCAGACAGGAATCACAAGCGTGACCACAAATCAAGGGATAGGGATAGGACTTATGACAGAGAAGGAAGCAGGGATAGGGATTACGAAAGAGAGGGTAGCAAAGATAGGTTGAAGGTGAACCGTGATGAGGGGAGGGAAGATTTGGTGGAGCCACGACTCTCCTCACATTCTCATAAGCGGAAAGAGAGGGAGCACAGTGAGGACAGGGACTATGAGGATAAGAAAATTAGGGTTTCTGAGGAGAGGAAGGAAGGGAGGAGGGAACGGAGGAAATTTGGGGATAAAGTCAAGAAGGAGGAAGAAGAAGAAGATGGTAATGATAATATTAGAGGCATTCATGAGGCCAAGGTCAAGGAGGAAGTCGCTGATGGTGCCCATGGCTCAGCTTCTTCCAATGACACTGCGTTTATCCAAAATGGTGCCTTGGGATCACCTGCTGTGGCGCCCATGAGTGTGCCTGAGACATCTTTGGCTCCTCCTTCTTGCTTTCCTATCAAGGTATCTTCGAATTCTACCACAAATGAAAATAAGGGCGTTAGTATTATCAGGTCTCATGAGGTTACTGGAAAATCTAGTACAGATGGGTCATCTTCAGCTGCTGGAAAAACTGGGAGCCTCTCTATTGATGCCCTAGCTAAGGCTAAGAAAGCTTTACAAATGCAGAAAGAGTTGTCAGAAAAGCTAAAGAAAATTCCTCAGTTGAATAAGAGTTCTAGCCAAAATTCACAAGGAAGCTCGAACTTGGGTTCAATGAATGAATCTGCAGTACCCTCTTCTGCTGCTGGAGTGGCATTAAAAAGTTCCACCTCAGCTTCTTTGGGCCATGTTGCAAATATGTCAATGTTCCCCTCAACTGCTTTTGCTGCTTCTGCTAATACTCCAGTAATTGGCACTAGTGCTGTTGGTATTCCAAATGCAACTCTGCCCAACTTGGAAGCTGTCAGGCGTGCTCAGGAGCTTGCTGCCAGGATGGGATTTCGTCAAGATCCACAATTTGCTCCTCTGATAAATATGTTTCCTGGTCAGATGGTAACAGATGTTGCTCTCCTGCAGAAACCCACAAAGGCCCCTGTTCTTCGTCTTGATGCTCAGGGACGGGAAATAGATGAGCAGGGAAATGTTATTAATGTGACTAAGCCCATCAACCTTAGCACATTAAAGGTCAACATTAACAAACAAAAGAAAGAAGCATTTGAAATACTACAGCCTGTATTGGATGTCGATCCTGAATCTAATCCTCATTTTGATGCAAGCATGGGTATCAACAAAACAAAGCTCCTGCGGCCCAAGAGGATGAATTTCCAATTTGTGGAGGAAGGAAAATGGTCAAAAGATGCTGAAACAATAAAATTGAAGAGTAAATTTGGAGAAGCTCAAGCAAAAGAGCACAAGGCCAAACAAGCACAGTTGGCAAAGGCAAAGGCTGCTCCTGATATAAATCCTAACTTAATAGAAATAACAGAGAGAGTTGTAATTAAAGAAAAGCCCAAGGACCAAATTCCAGAGATTGAGTGGTGGGATGTGCCTCTTCTGCATTCTGGAAATTATGGTGATGTTGATAATGGAATCATAGGCGAAGATAAACTGAAAATAGAAAAAATCAATTTTTATGTGGAGCATCCTCGTCCAATTGAGCCACCTGCTGAGCCTGCTCCCCCACCTCCTCAACCACTCAAGCTAACTAAGCAAGAGCAGAAGAAACTCCGGACGCAAAGACGTATAGCTAAGGAGAAAGAGCGACAGGAGATGATAAGACAGGGTGTCATAGAACCACCAAAACCAAAGGTCAAGATTAGCAATTTAATGAAAGTACTTGGCTCTGAAGCAACTCAAGATCCTACTCGGCTCGAAAAAGAAATACGTACCGCAGCTGCAGAGCGTGAGCAGGCTCACATAGATAGGAACATTGCACGCAAGCTTACTCCTGCCGAGCTGCGGGAGAAGAAGGAGAGGAAGCTGTTTGATGACCCAAATACACTGGAGACACTTGTCTCTCTTTACAGGATAAATGACCTCTCACATCCGAAGGCCCGATTCAGAGTTGATGTTAATGCTCAAGAGAACCGTTTGACTGGATGTGCTGTGATTTGTGATGGTATTAGTGTTGTTGTTGTTGAAGGTGGAAGCAAGTCAATTAAGAGGTATGGGAAACTTATGCTTAGACGTATTAATTGGAGTGAAGTTTCAAAAGAGAAAGAAGAAAATGAAGATTCAGATGATGACAAGCCTGCCAATAAGTGTGTTCTGGTGTGGCAAGGAAGTGTTGCCAAACCCAGCTTCTATAGGTTCAGTGTCCATGATTGCATCACCGAAGCAGCTGCCCGAAAAGTTTTTGTGGATGCTGGTGTTCCTCATTATTGGGACCAAGCCGTGAACTACAAAGAAGATGAAGCTGTTTAA
Predicted protein sequences of Glyma01g43990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g43990.1 sequence type=predicted peptide gene model=Glyma01g43990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDRVKSEKRSRDRHLERDDKYHRDSDDHRRHRSDRNHKRDHKSRDRDRTYDREGSRDRDYEREGSKDRLKVNRDEGREDLVEPRLSSHSHKRKEREHSEDRDYEDKKIRVSEERKEGRRERRKFGDKVKKEEEEEDGNDNIRGIHEAKVKEEVADGAHGSASSNDTAFIQNGALGSPAVAPMSVPETSLAPPSCFPIKVSSNSTTNENKGVSIIRSHEVTGKSSTDGSSSAAGKTGSLSIDALAKAKKALQMQKELSEKLKKIPQLNKSSSQNSQGSSNLGSMNESAVPSSAAGVALKSSTSASLGHVANMSMFPSTAFAASANTPVIGTSAVGIPNATLPNLEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVTDVALLQKPTKAPVLRLDAQGREIDEQGNVINVTKPINLSTLKVNINKQKKEAFEILQPVLDVDPESNPHFDASMGINKTKLLRPKRMNFQFVEEGKWSKDAETIKLKSKFGEAQAKEHKAKQAQLAKAKAAPDINPNLIEITERVVIKEKPKDQIPEIEWWDVPLLHSGNYGDVDNGIIGEDKLKIEKINFYVEHPRPIEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKERQEMIRQGVIEPPKPKVKISNLMKVLGSEATQDPTRLEKEIRTAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNTLETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVICDGISVVVVEGGSKSIKRYGKLMLRRINWSEVSKEKEENEDSDDDKPANKCVLVWQGSVAKPSFYRFSVHDCITEAAARKVFVDAGVPHYWDQAVNYKEDEAV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
