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Report for Sequence Feature Glyma01g43933

Feature Type:gene_model
Chromosome:Gm01
Start:54780692
stop:54792732
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g43933
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54130AT Annotation by Michelle Graham. TAIR10: RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715 SoyBaseE_val: 8.00E-49ISS
GO:0015969GO-bp Annotation by Michelle Graham. GO Biological Process: guanosine tetraphosphate metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008081GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity SoyBaseN/AISS
GO:0008728GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP diphosphokinase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
PTHR21262Panther GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE JGI ISS
PF01966PFAM HD domain JGI ISS
PF02824PFAM TGS domain JGI ISS
PF04607PFAM Region found in RelA / SpoT proteins JGI ISS
UniRef100_G7K6I5UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP pyrophosphokinase n=1 Tax=Medicago truncatula RepID=G7K6I5_MEDTR SoyBaseE_val: 0ISS
UniRef100_G7K6I5UniRef Annotation by Michelle Graham. Best UniRef hit: GTP pyrophosphokinase n=1 Tax=Medicago truncatula RepID=G7K6I5_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g43933
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g43933 not represented in the dataset
Glyma01g43933 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43933
ParalogEvidenceComments
Glyma11g01405 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43933 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g229200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g43933
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g43933
>Glyma01g43933.1   sequence type=CDS   gene model=Glyma01g43933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATTCTTTTCTCTTCCAACCACTCATTTCCCGGGAAAAATAACTGCCTCTTCCATCATCGCTATTATTCACTTCACTATGAGCATGAGCGTGCTCTCATGCCAACGTTCTACTATGTTAGCAGCTCAGAACAATTCTCCATTTCTTCGCAGATTCCGATCCTTCAAACCTCACCGTTCCCGATTTCGCTGTTTGCTTGACCAAATCTCTGCTCCCACTCTTCTCACCTCCGATAATGTCATCGCCGCCGCCGCCAAAGCCGCCTCCGTACATAGTGCCGTCTCCTCCGCCATCACACAGGTCGCCGTCACCGCTGTCGCCATTGCTTCCGGCGCCTGTCTTTCCACCAAGTTTGATTTCCTTTGGCCCAAACTGCAGGAACAATCAGGTACTGTGATGCAGGATGGAGTAGATGTTACTGGCTATCCTATATTTAACGATGCAAAGGTACAGAAGGCTATAGCTTTTGCAAGAAAAGCCCACCGTGGCCAAATGCGGAAGACAGGAGACCCTTATTTAACACATTGTATCCACACAGGAAGAATTTTGGCTGCATTGGTTCCATCAAGTGGTAAACGAGCTGTTGACACTGTTGTGGCTGGTATATTACATGACGTGGTTGACGACACTTGCCAAAGTCTGCGAGACATTGAGGCAGAGTTTGGGGATGATGTGGTCAAGTTGGTAGCCAGTGTTTCAAGGTTAAGCTATATTAATCAGCTATTACGCAGACATCGGAGGGTAAGTGTAAACCAGGGTGTCCTTGGCCAAGAAGAGGCAAGTAATTTACGAGTGATGCTTTTGGGAATGGTTGATGATCCACGTGTTGTGCTCATCAAGCTTGCAGATCGTCTTCACAACATGAGAACAATTTATGCTCTGCCATTGCAAAAAGCTCAAGCTGTTGCAGAGGAGACCTTAATCATTTGGTGTTCACTTGCTTCAAGATTGGGCCTATGGGCATTGAAAGCTGAACTGGAGGATTTATGCTTTGCTGTTCTGCAGCCTCAAATATTTCAAAAGATGCGAGCTGATCTGGCTTCCATGTGGAGTCCTACTAGCAGAACAGGAAACCCGAGAAGATTATCCATAAAAGGCAACTTGATACATTTGGATGAGAACAGTTCAACTGCTTTCTGCAATGGATCCTTGACATTCAATGAGGATGTAAATATGAAGGATCTTTTGGAAGCTGTAGTCCCATTTGATATATTGTTGGATCGGAGAAAACGGGCTAACTATCTCAGTAGTATTGGGAATAATCTAGAGACATGCACGAAACCAAAGGTTGTTCAAGATGCTGGGTTAGCTTTGGCATCAATGGTAATTTGCGAGGAAGCACTTGAGCGAGAAATGATTATATCAGCTTCTTATGTTCCGGGAATGGAAATTACATTATCAAGCCGATTAAAAAGCCTCTATAGTTTATATAGCAAGATGAAACGAAAGGATATAAGCATTGATAAAGTATATGATGCACGTGCATTAAGAGTAGTTGTGGGAGACAAGAATGGAACTTTACATGGTCCTGCAGTTCAGTGTTGTTATAGTCTTCTTGACATTGTACACAGGCTTTGGACTCCAATAGATGGTGAATTTGATGACTACATCATTAATCCGAAGCCTAGTGGCTATCAGTCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGGACACAGAGGATGCATGAGTGTGCTGAACAAGGACTTGCTGCACATTGGCTTTACAAGGAAACTGGCAATCCTTTTTTATCCATAGACAGCATGGATGAACCTGAAACTGAAGCATCCTCCTATTTCTCCAAAGATCTAGAGGAAGGAAATTCTTCAGATATTTTATTAAGTAAATATAAGTCATTGAAGGCTGGACATCCAGTCCTCAGAGTAGAAGGAAGTCACTTACTTGCTGCAATTATCATCAGTGTAGAAAATGATGAAAGAGAATTGCTAGTTGCTGTGAGCTTTGGGCTAGCAGCTTCTGAAGCAGTAGCTGACAGAAGATCTTTCCAGATTAAGCGATGGGAAGCTTATGCACGACTGTACAAAAAGGTGTCTGATGAATGGTGGTTTGAACCGGGGCATGGGGATTGGTTTACGTGTCTAGAGAAGTACACACTGTGTCGAGATGGTATGTATCATAAGCAAGACCAATTTGGGCGCCTACTCCCAACATTTATCCAGGTTATCAATTTTACTGAGCAAGAAGAATCTGAATATTGGGCTGTTGTATCTGCTGTGTTTGAGGGCAGGCAAGTGGATTGGATAACATCTCGGTCAAAATTTGACTTGGTTGCATCAACTTCTGTAGAAGCTGGCATCAATAACAAGGTGAACCTTTTGAGAACAATGCTCTCTTGGGAAGAGCAATTGCGCTCTGAAGTAAGTTTCATGCAAGCAAAGCATGATGCAAAGCTTTATGATCTTCATGGTTCTCTTGGGGAAGTGGTAATTATATGTTGGCCTCATGGTGAAATTTTGAGGTTAAAGGCGGGTAGCACTGCTACTGATGCTGCTCAAAGAGTTGGTTTGGAGGGAAAGCTGGTTTTGATTAATGGACAGTTAGTACTGCCCAACACAAAACTCAGAGATGGCGATGTAGTTGAAGTAAGAATTTAA
Predicted protein sequences of Glyma01g43933
>Glyma01g43933.1   sequence type=predicted peptide   gene model=Glyma01g43933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFFSLPTTHFPGKITASSIIAIIHFTMSMSVLSCQRSTMLAAQNNSPFLRRFRSFKPHRSRFRCLLDQISAPTLLTSDNVIAAAAKAASVHSAVSSAITQVAVTAVAIASGACLSTKFDFLWPKLQEQSGTVMQDGVDVTGYPIFNDAKVQKAIAFARKAHRGQMRKTGDPYLTHCIHTGRILAALVPSSGKRAVDTVVAGILHDVVDDTCQSLRDIEAEFGDDVVKLVASVSRLSYINQLLRRHRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVAEETLIIWCSLASRLGLWALKAELEDLCFAVLQPQIFQKMRADLASMWSPTSRTGNPRRLSIKGNLIHLDENSSTAFCNGSLTFNEDVNMKDLLEAVVPFDILLDRRKRANYLSSIGNNLETCTKPKVVQDAGLALASMVICEEALEREMIISASYVPGMEITLSSRLKSLYSLYSKMKRKDISIDKVYDARALRVVVGDKNGTLHGPAVQCCYSLLDIVHRLWTPIDGEFDDYIINPKPSGYQSLHTAVQGPDNSPLEVQIRTQRMHECAEQGLAAHWLYKETGNPFLSIDSMDEPETEASSYFSKDLEEGNSSDILLSKYKSLKAGHPVLRVEGSHLLAAIIISVENDERELLVAVSFGLAASEAVADRRSFQIKRWEAYARLYKKVSDEWWFEPGHGDWFTCLEKYTLCRDGMYHKQDQFGRLLPTFIQVINFTEQEESEYWAVVSAVFEGRQVDWITSRSKFDLVASTSVEAGINNKVNLLRTMLSWEEQLRSEVSFMQAKHDAKLYDLHGSLGEVVIICWPHGEILRLKAGSTATDAAQRVGLEGKLVLINGQLVLPNTKLRDGDVVEVRI*






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