Glyma01g43920 - SoyBase

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Report for Sequence Feature Glyma01g43920

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54775780
stop:	54778022
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g43920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43950	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF946) \| chr5:17686707-17688623 REVERSE LENGTH=566	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR17204	Panther	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	JGI		ISS
PTHR17204:SF20	Panther		JGI		ISS
PF06101	PFAM	Plant protein of unknown function (DUF946)	JGI		ISS
UniRef100_I1LG17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LG17_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M8Z1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g04350/T6K12_3 n=1 Tax=Arabidopsis thaliana RepID=Q9M8Z1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g43920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43920

Paralog	Evidence	Comments
Glyma11g01390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g229100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g43920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g43920

Limit To All Plant Sequences

>Glyma01g43920.2   sequence type=CDS   gene model=Glyma01g43920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTCTTCAAATGTAACCTCTTTCCTTGGAATCGGAAAGGCATCACTCTCCCTCAAACCTTTTCTCTTCCCTCTCCGATTCCCCAATGGCCCCAAGGACAAGGTTTTGCTTCTGTAATTGTAAACCTTGGGGGAATAGAAGTGTGCAAGGTCACTGGGTTTGAGTTTGTTTGGAACAGCAACATCGGAAAGCCTGTTGCATTCTATAAACCTGTGGGAATACCAGATGGGTTCCATATCCTTGGACACTATTGTCAGTCCAGCGACAAGCCGTTACGGGGTTTTGTGCTTGTTGTTAGGGAAGTGGAAACTGCTTCATCTGAGACAAGCAACCGTGACAAGTTAACAGCCTTGAAGAATCCCCTTGACTACATGTTAGTATGGTGTTCCAATGCAGGAAGTAAGGAATTGCCAATTGGTTCTGCTTATTTTTGGGTGCCCCAGCCTCCTGAAGGTTACAGTGCCCTCGGCTTTTTGGTTGCTAACATGCCTGACAAGCCCAATTTGGATGAAATGATTTGTGTTCGTGCTGACCTCACTGATAAATGTGAACCTTACCGGCTGATGCTTGATGCTGCTTCTGTAATTCCTGAGTTTCCATTTCAGGTGTGGAGTTTGAGACCTCGTGACCGTGGCATGCTGGGGAAAGGAGTTTCAGTAGGGACTTTTTTCTGCACTAGTTGTTGGAACAATGGAGATGAGCTATCTGTTGTGTGCTTGAAGAACCTAAATCCTCATTATGGTCCTACTGTTTTCTTTCATCCTGAGGAAGTTTACTTGCCTTCTTCTGTTGATTGGTTTTTCAATAATGGAGCCTTGTTGTACCGAAAGGGCGTGTCCACGGGAGAGGCCATTGATGCAGCTGGCTCAAATTTGCCAGGTGGGGGAAGAAATGATGGGGAGTTTTGGATAGATTTGCCAAGTGATGATAAAAGGGATTTTGTCAAACATGGGGACTTGAAGAGTGCTAAGCTTTATGTTCATGTGAAGCCTGCTCTTGGTGGAACTTTTACTGATATTGCTATGTGGGTGTTTTGCCCTTTCAATGGACCCTCCACCCTGAAAATTGGAATTACAAGTAGGGCTTTTAGTAAGGTTGGAGAGCATGTTGGTGACTGGGAGCATTTTACACTTCGTATATGCAACTTCTCCGGAGAATTGTGGAGTATATATTTCTCACAGCACAGTGGTGGTAAATGGGTGGATGCCTATGAATTGGAGTATATTGATGGCAATAAAGCTGTTGTCTACTCATCAAAAAATGGACATGCAAGTTACCCCCACCCTGGAACATATCTCCAAGGATCTTCAAAACTTGGGATTGGCATTAGGAATGATGCTACTCGTAGTAATTTGTATGTGGATTCTAGCGTTCAATACGAGCTTGTTGCAGCCGAGTATCTAGGAGATGTTGTCAGAGAGCCTCAATGGTTGCAGTTTATGAGAGAGTGGGGTCCAAAAATTGTTTATGATTCTAAAACTGAGCTTGATAAGATAATAAATGCTCTTCCTGGCGGGCTTCGCAATTCATTTGGTAGCTTGATTAAAAAGCTTCCGGTAGAGCTGTATGGTGAGGAAGGTCCTACAGGGCCAAAAGAGAAAAATAACTGGATAGGAGATGAAAGATGGTGA

Predicted protein sequences of Glyma01g43920

Limit To All Plant Sequences

>Glyma01g43920.2   sequence type=predicted peptide   gene model=Glyma01g43920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LLFKCNLFPWNRKGITLPQTFSLPSPIPQWPQGQGFASVIVNLGGIEVCKVTGFEFVWNSNIGKPVAFYKPVGIPDGFHILGHYCQSSDKPLRGFVLVVREVETASSETSNRDKLTALKNPLDYMLVWCSNAGSKELPIGSAYFWVPQPPEGYSALGFLVANMPDKPNLDEMICVRADLTDKCEPYRLMLDAASVIPEFPFQVWSLRPRDRGMLGKGVSVGTFFCTSCWNNGDELSVVCLKNLNPHYGPTVFFHPEEVYLPSSVDWFFNNGALLYRKGVSTGEAIDAAGSNLPGGGRNDGEFWIDLPSDDKRDFVKHGDLKSAKLYVHVKPALGGTFTDIAMWVFCPFNGPSTLKIGITSRAFSKVGEHVGDWEHFTLRICNFSGELWSIYFSQHSGGKWVDAYELEYIDGNKAVVYSSKNGHASYPHPGTYLQGSSKLGIGIRNDATRSNLYVDSSVQYELVAAEYLGDVVREPQWLQFMREWGPKIVYDSKTELDKIINALPGGLRNSFGSLIKKLPVELYGEEGPTGPKEKNNWIGDERW*

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