SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17020 | AT | Annotation by Michelle Graham. TAIR10: exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1075 | SoyBase | E_val: 0 | ISS |
| GO:0000059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein export from nucleus | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG2020 | KOG | Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) | JGI | ISS | |
| PTHR11223 | Panther | CHROMOSOME REGION MAINTENANCE PROTEIN | JGI | ISS | |
| PTHR11223:SF2 | Panther | CHROMOSOME REGION MAINTENANCE PROTEIN 1/EXPORTIN 1 | JGI | ISS | |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | ISS | |
| PF08389 | PFAM | Exportin 1-like protein | JGI | ISS | |
| PF08767 | PFAM | CRM1 C terminal | JGI | ISS | |
| UniRef100_G7JRR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Exportin-1 n=1 Tax=Medicago truncatula RepID=G7JRR9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337807 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337807 related cluster n=1 Tax=unknown RepID=UPI0002337807 | SoyBase | E_val: 0 | ISS |
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Glyma01g43900 not represented in the dataset |
Glyma01g43900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g01370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g228900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g43900.1 sequence type=CDS gene model=Glyma01g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCCGAGAAGCTCAGAGATTTAAGCCAACCCATTGATGTGCCTTTACTCGATGCCACTGTCGCTGCCTTCTATGGCACCGGATCCAAGGAACAGAGAACTGCTGCCGATCAGATTTTGCGCGATTTGAAAAATAATCCAGACACGTGGCTTCAAGTCATGCATATTTTGCAGAACACTCAAAGCCTAAATACCAAGTTCTTTGCCTTGCAGGTTCTAGAAGGTGTAATTAAATATAGATGGAATGCATTACCTGTTGACCAGCGAGATGGAATGAAAAATTTCATCTCTGATGTTATTGTACAGCTTTCTGGTAATGAGGCCTCATTTCGAACAGACCGGTTGTATGTCAACAAACTCAATATTATATTAGTTCAGATTTTGAAGCATGAATGGCCAGTGAGATGGAGAAGCTTCATTCCTGACCTTGTTTCAGCAGCTAAAACTAGTGAAACAATTTGCGAGAATTGTATGGCAATATTGAAGCTCTTGAGTGAAGAGGTTTTTGATTTTTCAAGAGGAGAGATGACTCAGCAGAAGATAAAAGAGCTTAAACACTCATTGAATAGTGAATTTCAGCTCATACATGAGTTGTGCTTATATGTGCTATCAGCGTCCCAACGGACTGAGCTCATACGGGCAACACTGTCTACATTGTATGCATTCCTATCATGGATTCCTTTGGGATATATATTTGAATCACCATTGCTCAAGACACTGCTAAAATTTTTCCCAATTCCTGCATATCGGAACCTGACTTTGCAATGTTTAACTGAGGTAGCAGCCCTTCAATTTGGGAATTACTATGATGCCCATATTAAGATGTATAATATATTCATGGGTCAGTTGCAGACCATACTTCCGCCCACTACTAATATACCCGAGGCATATTCACATGGTTCAAGTGAGGAACAAGCATTTATACAGAATTTGGCACTGTTCTTCACCTCATTTTACAAGGTTCACGTTCGAATTCTGGAATCCACTCAAGAGAATATATCTGCTTTGCTATTGGGTCTTGAATATCTTATTAATATCTCATATGTGGATGATACTGAGGTTTTCAAGGTCTGTTTGGACTACTGGAATGTCTTGGTTTCAGAATTGTTTGAGCCAAACCGTAGCTTGGAAAACCCTGCAGCAGCAAACATGATAGGACTTCAGGTGCCTGGTATGATTGATGGCATTGGTTCACAGCTTCTTCAGCACCGGCAGCTTTATGCCGGTCCCATGTCAAAGTTGAGAATGCTTATGATCTGTCGTATGGCCAAACCAGAAGAGGTTCTCATAGTTGAAGATGAAAATGGTAATATAGTCCGTGAAACAATGAAGGACAATGATGTTCTTGTTCAATACAAGATTATGAGGGAGACTCTTATTTACTTGTCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGAAAGTTAAGTAAACAACTTAGTGGTGAGGACTGGACATGGAACAATTTGAACACACTGTGCTGGGCAATAGGATCTATATCTGGTTCCATGGTGGAAGAACAGGAAAATAGATTTTTGGTTATGGTCATTCGTGATTTATTAAATCTATGTGAAATCACAAAGGGAAAAGATAACAAAGCTGTTATTGCAAGTAATATCATGTATGTTGTGGGGCAGTATCCCCGGTTTTTAAGAGCTCATTGGAAGTTTCTAAAAACTGTTGTGAACAAGTTGTTTGAGTTTATGCATGAGTCACATCCTGGAGTTCAGGATATGGCCTGCAACACATTTCTGAAAATAGTCCAGAAGTGCAAGCGTAAATTTGTAATCACCCAGGTTGGAGAAAATGAGCCATTTGTTTCTGAACTTCTATCTGGCCTTCCAAATACAATTGCAGATCTTGAACCCCATCAAATAAACACGTTCTATGAATCTGTTGGTAACATGATTCAAGCAGAGTCTGATGCCCAGAAGAGAGATGAATATCTTCAAAAGTTGATGGTGCTCCCAAACCAGAGATGGATGGAAATTATAGGGAAGGCACATCAAAATGCTGATTTTCTGAAGGATCAAGATGTAATCCGAAATGTGCTTAATATATTGCAGACGAATACGAGTGTTGCATCTTCTTTAGGAACATATTTCCTGCCACAGATCACATTGATCTTTTTGGACATGTTGAATGTGTACAGAATGTTTAGTGAGCTTATATCAAAAAGTATTGCAGAAGGGGGACCTTTTGCATCTAGAACATCCTATGTGAAACTTCTACGTTCGGTTAAGAGAGAAACACTTAAACTAGTTGAGACATTCTTGGACAAGGCTGAAGATCAACCACAAATTGGAAAACAATTTGTGCCACCAATGATGGATCCTGTTCTAGGAGATTATGCCAGAAATGTGCCTGATGCGAGGGAATCAGAGGTTTTGTCACTTTTTTCCACAATTGTAAACAAATATAAAGCTGCCATGGTTGAAGATGTCCCACAAATATTTGAAGCTGTATTCCAGTGTACACTGGAGATGATTACAAAAAATTTTGAAGATTACCCAGAGCATCGGCTAAAATTCTTCTCTTTACTGCGTGCCATAGCTACTCATTGTTTCCCTGCTTTGATCTGCTTGTCAAGTCAGCAACTGAAACTTGTTATGGATTCAATAATATGGGCGTTTCGGCATACAGAAAGGAATATTGCTGAAACTGGGCTGAACCTCTTGTTGGAGATGCTGAAGAAGTTTCAGGAATCAGAGTTCTGTAATCAGTTTTATCGAACATACTTTTTGACAATTGAGCAAGAGATATTTGCTGTCTTGACAGACACTTTTCATAAGCCTGGGTTCAAATTTCATGTCTTGGTGCTTCAACATTTGTTCTGTCTGGCAGAAACTGGTGCCCTAACTGAGCCTCTTTGGGATGCTGCTACAAATCCTTATTCATACCCAAGTAATGCAGCTTTTGTACGCGAGTTTACGATAAACCTTTTAAGCACTTCATTTCCAAACATGACTGCTTCAGAGGTTACTCAATTTGTTAATGGCCTTTTTGAGTCCACCAATGACCTCCCCACATTTGAAACCCACATACGAGATTTTCTTGTACAATCCAAAGAATTTTCAGCTCAGGATAACAAAGATCTTTATGCTGAAGAGGCTGCAGCTCAGAGAGAGAGGGAACGACAAAGAATGCTTTCTATTCCAGGACTTGTTGCCCCGAGCGAGTTGCAAGATGAAATGGTTGACTCATAG
>Glyma01g43900.1 sequence type=predicted peptide gene model=Glyma01g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLKNNPDTWLQVMHILQNTQSLNTKFFALQVLEGVIKYRWNALPVDQRDGMKNFISDVIVQLSGNEASFRTDRLYVNKLNIILVQILKHEWPVRWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKHSLNSEFQLIHELCLYVLSASQRTELIRATLSTLYAFLSWIPLGYIFESPLLKTLLKFFPIPAYRNLTLQCLTEVAALQFGNYYDAHIKMYNIFMGQLQTILPPTTNIPEAYSHGSSEEQAFIQNLALFFTSFYKVHVRILESTQENISALLLGLEYLINISYVDDTEVFKVCLDYWNVLVSELFEPNRSLENPAAANMIGLQVPGMIDGIGSQLLQHRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMVEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHESHPGVQDMACNTFLKIVQKCKRKFVITQVGENEPFVSELLSGLPNTIADLEPHQINTFYESVGNMIQAESDAQKRDEYLQKLMVLPNQRWMEIIGKAHQNADFLKDQDVIRNVLNILQTNTSVASSLGTYFLPQITLIFLDMLNVYRMFSELISKSIAEGGPFASRTSYVKLLRSVKRETLKLVETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFSTIVNKYKAAMVEDVPQIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQESEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKFHVLVLQHLFCLAETGALTEPLWDAATNPYSYPSNAAFVREFTINLLSTSFPNMTASEVTQFVNGLFESTNDLPTFETHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLVAPSELQDEMVDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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