Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g43860): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g43860): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma01g43860
Feature Type: gene_model
Chromosome: Gm01
Start: 54732549
stop: 54737378
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g43860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G16090 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492
SoyBase E_val: 0 ISS
GO:0008295 GO-bp
Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process
SoyBase N/A ISS
GO:0030433 GO-bp
Annotation by Michelle Graham. GO Biological Process: ER-associated protein catabolic process
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG0802
KOG
E3 ubiquitin ligase
JGI ISS
PTHR12477 Panther
SYNOVIOLIN-RELATED
JGI ISS
PTHR12477:SF10 Panther
SYNOVIOLIN-RELATED
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7K6H0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase synoviolin n=1 Tax=Medicago truncatula RepID=G7K6H0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JAH3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAH3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g43860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g43860
Paralog Evidence Comments
Glyma11g01330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g43860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g228500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g43860
Transcripts of Glyma01g43860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g43860.2 sequence type=transcript gene model=Glyma01g43860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGACAAAACTCGGAAATCCCACGGCGACAGCGAAAGAAATTAGGAGAGGTGAGGTGACCACCGACGATTCCATTTCTACGAACTCAGACCCTTCAATCCCAACTCAGAAAAAAAAAATCATGAAGCTGAAGACATATGCGGGTCTTAGTATCATTGCAACTCTGGCTATTATATATCATGCGTTTAACAGTAGGGGCCAGTTTTATCCCGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATTGAGACCACTCCTTCGGTTCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTTGATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCGTTAGGGACCTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCTTGAAGAACTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTTGTATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTTCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGCCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACTGCTCAGACTGAGGCTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTATGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCAGTTCAAATATATATGGCTGAATCTTCTGATAAGGACCGTAATGGAGAGCAAACTTCCAGTGAAGAAGCACAAAGGCAGTTTCTTATCGCTGGTAGACCACCAAATCTATCCTTTCCTCCAATGCAAAACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAACTCTCAGCTTGAAGCTTATAGAAAACTTCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATGCTGCAGAGGATAAAGGCTGATAGAAGTGTAGATGAGGGCACGCCATCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCATCTGGATCTGGTCATGGTTATCGTGAGGATATTCGAGATGGAAAAGCATAAAGTCTGCTGTTTCTGGTTTATGCCAGGAGCAGACTGCCTAATGTAGATATAGGAAGAGGAAAATACAGAAATCACAGCATTGCTCTAATGTGACATCTGTTATTCGTGATACTAATCTTGTAAATGCATAGTGCCCCTTAAAAATGATTTATTTTGGCTTCCTTTTTTTTGTTTCCATGTGGATTGTACGCATATATTAGCTTTTATAAAAGTTACCTTTTGATCAGAAAATGGGGATTTATTGTTTGAGGCTTATTGTTTACCCTTTAAAGTGGGAATTCCTCATCAATGTTTGAGGTCTATTGTTTTCCTATTCTATTAAAGTGGGG
Coding sequences of Glyma01g43860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g43860.1 sequence type=CDS gene model=Glyma01g43860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCTGAAGACATATGCGGGTCTTAGTATCATTGCAACTCTGGCTATTATATATCATGCGTTTAACAGTAGGGGCCAGTTTTATCCCGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATTGAGACCACTCCTTCGGTTCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTTGATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCGTTAGGGACCTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCTTGAAGAACTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTTGTATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTTCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGCCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACTGCTCAGACTGAGGCTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTATGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCAGTTCAAATATATATGGCTGAATCTTCTGATAAGGACCGTAATGGAGAGCAAACTTCCAGTGAAGAAGCACAAAGGCAGTTTCTTATCGCTGGTAGACCACCAAATCTATCCTTTCCTCCAATGCAAAACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAACTCTCAGCTTGAAGCTTATAGAAAACTTCTTCAATGCCAGATTCAGAACCTACAGATTCTGCAAAATCAGCTCGAGATGCTGCAGAGGATAAAGGCTGATAGAAGTGTAGATGAGGGCACGCCATCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCATCTGGATCTGGTCATGGTTATCGTGAGGATATTCGAGATGGAAAAGCATAA
>Glyma01g43860.2 sequence type=CDS gene model=Glyma01g43860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCTGAAGACATATGCGGGTCTTAGTATCATTGCAACTCTGGCTATTATATATCATGCGTTTAACAGTAGGGGCCAGTTTTATCCCGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCAGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTTATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCAATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTCGAGTACATTGAGACCACTCCTTCGGTTCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTTGATAGCCTTTTCTTATACAGTTCTATGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACTACAACGGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCGTTAGGGACCTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCTTGAAGAACTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACGGCCAAGAAACTTGTATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTTCAGCTGCAGGGCAGCAAGGATCACAGTCAGATGCCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAGCACTGCTCAGACTGAGGCTACTGATAGTTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTATGAATTCTTTTGTATGCTCTCCTGGATACACTCTTCATCCCCCAGTTCAAATATATATGGCTGAATCTTCTGATAAGGACCGTAATGGAGAGCAAACTTCCAGTGAAGAAGCACAAAGGCAGTTTCTTATCGCTGGTAGACCACCAAATCTATCCTTTCCTCCAATGCAAAACTTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCCCAAACTCTCAGCTTGAAGCTTATAGAAAACTTCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTCGAGATGCTGCAGAGGATAAAGGCTGATAGAAGTGTAGATGAGGGCACGCCATCATCAGATAGCAGAGGCAAGAGTGTCATTTCCTCATCATCTGGATCTGGTCATGGTTATCGTGAGGATATTCGAGATGGAAAAGCATAA
Predicted protein sequences of Glyma01g43860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g43860.1 sequence type=predicted peptide gene model=Glyma01g43860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKLKTYAGLSIIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATLEELNASDATCIICREEMTTAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTSAAGQQGSQSDAHQQGTTGTGSGSTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSMNSFVCSPGYTLHPPVQIYMAESSDKDRNGEQTSSEEAQRQFLIAGRPPNLSFPPMQNFHFLPSQAHASPVNYGEGFENDPNIPNSQLEAYRKLLQCQIQNLQILQNQLEMLQRIKADRSVDEGTPSSDSRGKSVISSSSGSGHGYREDIRDGKA*
>Glyma01g43860.2 sequence type=predicted peptide gene model=Glyma01g43860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKLKTYAGLSIIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSMKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATLEELNASDATCIICREEMTTAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTSAAGQQGSQSDAHQQGTTGTGSGSTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSMNSFVCSPGYTLHPPVQIYMAESSDKDRNGEQTSSEEAQRQFLIAGRPPNLSFPPMQNFHFLPSQAHASPVNYGEGFENDPNIPNSQLEAYRKLLQCQIQILQNQLEMLQRIKADRSVDEGTPSSDSRGKSVISSSSGSGHGYREDIRDGKA*