Glyma01g43800 - SoyBase

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Report for Sequence Feature Glyma01g43800

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54706739
stop:	54713869
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g43800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03415	AT	Annotation by Michelle Graham. TAIR10: Transcription factor DP \| chr5:842842-845200 FORWARD LENGTH=385	SoyBase	E_val: 1.00E-158	ISS
GO:0000082	GO-bp	Annotation by Michelle Graham. GO Biological Process: G1/S transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005667	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG2829	KOG	E2F-like protein	JGI		ISS
PTHR12548	Panther	DP	JGI		ISS
PTHR12548:SF1	Panther	TRANSCRIPTION FACTOR DP	JGI		ISS
PF02319	PFAM	E2F/DP family winged-helix DNA-binding domain	JGI		ISS
PF08781	PFAM	Transcription factor DP	JGI		ISS
UniRef100_I1JAG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAG8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XZI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DP1 n=1 Tax=Populus tremula x Populus tremuloides RepID=Q7XZI4_9ROSI	SoyBase	E_val: 6.00E-178	ISS

Expression Patterns of Glyma01g43800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43800

Paralog	Evidence	Comments
Glyma11g01270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g228100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g43800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g43800

Limit To All Plant Sequences

>Glyma01g43800.2   sequence type=transcript   gene model=Glyma01g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCAAATTACACTAAGTGACGGAAATTGTACGAGAAAAAAATGTCGCTGCAAAAATGGAAAAGTTCTACTGTATTTGTAACATTTGGTATTTTCCACATTTTGGAAAAATGCTAAGCAATTCTCAAGCCTGAAAGGTTCACAAGATCCAAAATTCAATCATCTCACGTACCGTCCCCTTTAAAGTGGGAAGGGGATGAGTATTTTCCCTCACTGTACCATTCAGCATTTCAGCTAATGACACGAAGTGAGCGTTGATCACCATTTTGATACATTAATGATTTCGTTTCTCCGTTCATTCGACGATTATTGCATCAAGCGATATCAAATCACCAATCAATCATTAAAGAAGAAATTAAGTAAAGACAAATCACTAATTAGCCACAAGTCTTCTTTACCTGCGGTGTGAGTTCGGGAGTTGCGGTGCTGCCGGCGACGGAACTCTCGTACCTTACGTCTCTTTCGCTTGAGCTTCGGTTCCATAATAATATTGGTTATTTATGAAAATAAAATTCTCGCCGTTTTTAATTATGAACCGGTTTACTGTTCCGGTCCGGTTCGGTTTTTAAAGCACGCTAAAACCTAAGCTTGCTCATGTCTTCTCTTTCTCTCTCGTACACGCAAACACTTGTTCCGGTGGTCCCTCTCTCTTTCGCTTCATCTTCAACATTAGGTCTTCTCTGACTCTGTAGTCGTCACTGCTCAACGTCTTTGAGAGTTCATACTGAGTAGTTTGGCTTTACGTCAACTCCTGTTCAATTGAATTCAGTTTCCCTTGGTAGGATTTATTGCCAGGCCTTGAGGTAAGCAACTTACCAACATGGGAACACAACCCCAGCAAACATTTTGGGAGGAAGAGGATGAGGAGATGCAAGGCCGTGGAACCACTATCTCAGGTCAATCAATGTCAACAAGCAGAAGTTTGGGGTCTCCATCCAGCCGGAGTGAACAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCCAAGAAGAAAAAGAGGGGCCAACGTGCTATTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAGTGATATGGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAACTTTGTGAGGGATCTCATAATGATAATACAACAGACAATCCTACAGATGGTGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCTGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGATATGCAATTTTGTACTGCATTGCCTTATTTAAGCATGTTTGTATATTTTGTAAAGTAATTTGTCAGTAATTAATTGTCCTTCATAATAGTTAATCAGTACAGCCAATTCACTCAGTAGGTTAGAAGCGAACCAGTATGCATGAGTCTATATTCTTCTGGGTTGATTTTGGCAAATTCTTTGCTAACCATATCCATATTTACTACCTTAAGACCTTAACTGATTTTTTCCCCACATTTTCTGTGTATTATTTGCCCTTTTGTACTTATAATAGAGAAATTGGTTTGTACTAGCCCATAGAGATCATGGAATGTTATACATCAGCGTAGGATTAATTTTGGATTTCACGGATATTTAGTGTAAATTATTCCGTCTTATGTGTAATATGAAAAGGATGGAACATGTGATTTTTGGTTGATGAATAATTTCTTTTAAAACTGAAAGTCGAG

Coding sequences of Glyma01g43800

Limit To All Plant Sequences

>Glyma01g43800.1   sequence type=CDS   gene model=Glyma01g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACACAACCCCAGCAAACATTTTGGGAGGAAGAGGATGAGGAGATGCAAGGCCGTGGAACCACTATCTCAGGTCAATCAATGTCAACAAGCAGAAGTTTGGGGTCTCCATCCAGCCGGAGTGAACAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGTGCTATTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAGTGATATGGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAACTTTGTGAGGGATCTCATAATGATAATACAACAGACAATCCTACAGATGGTGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCTGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA

>Glyma01g43800.2   sequence type=CDS   gene model=Glyma01g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACACAACCCCAGCAAACATTTTGGGAGGAAGAGGATGAGGAGATGCAAGGCCGTGGAACCACTATCTCAGGTCAATCAATGTCAACAAGCAGAAGTTTGGGGTCTCCATCCAGCCGGAGTGAACAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCCAAGAAGAAAAAGAGGGGCCAACGTGCTATTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAGTGATATGGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAACTTTGTGAGGGATCTCATAATGATAATACAACAGACAATCCTACAGATGGTGGTGAAGGTTCTAGCATATATGCACAGGTTCCTACTTCTGTTTCAAACCCTCCAAATAGGCCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA

Predicted protein sequences of Glyma01g43800

Limit To All Plant Sequences

>Glyma01g43800.1   sequence type=predicted peptide   gene model=Glyma01g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQPQQTFWEEEDEEMQGRGTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDNPTDGGEGSSIYAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH*

>Glyma01g43800.2   sequence type=predicted peptide   gene model=Glyma01g43800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTQPQQTFWEEEDEEMQGRGTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVAKKKKRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDNPTDGGEGSSIYAQVPTSVSNPPNRPPSSPPLPGILKARVKNEH*

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