SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12410 | AT | Annotation by Michelle Graham. TAIR10: THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376 | SoyBase | E_val: 9.00E-134 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13452 | Panther | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED | JGI | ISS | |
| PF02926 | PFAM | THUMP domain | JGI | ISS | |
| UniRef100_G7K999 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: THUMP domain containing protein n=2 Tax=Medicago truncatula RepID=G7K999_MEDTR | SoyBase | E_val: 3.00E-178 | ISS |
| UniRef100_I1JAF5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAF5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g43640 not represented in the dataset |
Glyma01g43640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g01830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g226800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g43640.1 sequence type=CDS gene model=Glyma01g43640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCCGATGCCGCCGCCGCCGTCGCCGCCAACGGCAAAAAGAGAAGACGCTATCTTCCTCACAATAAGGCAGTGAAGAAGAAGGGTTCGTACCCTCTGCGGCCTGGCGTGCAAGGCTTTTTCATCACTTGCGATGGCGGCAGAGAACACCAAGCCTCTCGTGAAGCTCTCAATATTCTCGATTCCTTTTATGAAGAGCTAGTTGATGGGGAAAAGGAGTTACCCAGCAAACCTTTAAATAAAAAAATCACGTTTGCTGATTCTGACTCTTCTAGTAGTGATGGTGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCGTGCATGATGGGGATGAGGAAAAGGGGGACAAAAAGCCAAAATTGGATACTTCTAGTGACGACAATGCCAGTCATGACGATGGAGCAGGTGAAAAATCAGATCCTCATAACGTTGATGAACCGCACACTCAGGAAGAAAATAAAACTTGTGATAATAAAGGGAATAATGGCAATCTTAAGACTACAAAAGGGACAGCAGATGATCTACCAGCTGTGAAACAGTGCTGCAAAACAAACGTGCCTGCATGTAATTTTAGTGACAAAGTGGAACACAAGTCTATTGATAAGTTAATTGAAGAAGAATTCAAAGAATTGGGAGACAAGAATAAGAGGCGCTTTGTCAAGCTTGATTCTGGTTGTAATGGTGTAGTATTTGTTCAAATGCGGAAGAAAGATGGAGACCGAAGCCCCAAGGATATAGTTCACCGGATAGTGACATCAGCAGCATCAACAGGGAAACATATGTCAAGGTTTATTTTGAGAATTTTGCCAATTGAAGTCTCATGTTATGCTTCAAAGGAGGAAATTTCAAGAACAATCAAGCCTCTTGTGGAACAGTACTTTCCTGTGGAAACTCAAAATCCACTCAAGTTTGCTGTACTGTATGAGGCACGGGCAAATACTGGTGTTGACAGGATGGAAATCATCGATGCTGTGGCAAAGTCAGTTCCTGGACCCCATAAAGTTGATCTCAAAAATCCTGATAAAACTATAGTAGTTGAAATTGCCAGGACTGTGTGCTTGATCGGGGTCATTGAGAAATATAAGGAGCTTTCCAAGTACAATCTGAGGCAGTTAACATCACGTAAAGACTAA
>Glyma01g43640.1 sequence type=predicted peptide gene model=Glyma01g43640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPDAAAAVAANGKKRRRYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDSFYEELVDGEKELPSKPLNKKITFADSDSSSSDGEEEEEEEEEEEEEEEEAVHDGDEEKGDKKPKLDTSSDDNASHDDGAGEKSDPHNVDEPHTQEENKTCDNKGNNGNLKTTKGTADDLPAVKQCCKTNVPACNFSDKVEHKSIDKLIEEEFKELGDKNKRRFVKLDSGCNGVVFVQMRKKDGDRSPKDIVHRIVTSAASTGKHMSRFILRILPIEVSCYASKEEISRTIKPLVEQYFPVETQNPLKFAVLYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSKYNLRQLTSRKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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