SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G23950 | AT | Annotation by Michelle Graham. TAIR10: Galactose-binding protein | chr4:12442297-12444330 FORWARD LENGTH=561 | SoyBase | E_val: 2.00E-132 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0046658 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1396 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12953 | Panther | MEMBRANE PROTEIN CH1 RELATED | JGI | ISS | |
| PF07738 | PFAM | Sad1 / UNC-like C-terminal | JGI | ISS | |
| UniRef100_F4JPE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Galactose-binding protein n=1 Tax=Arabidopsis thaliana RepID=F4JPE9_ARATH | SoyBase | E_val: 8.00E-130 | ISS |
| UniRef100_I1LG68 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LG68_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g43600 not represented in the dataset |
Glyma01g43600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g01870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g226400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g43600.3 sequence type=transcript gene model=Glyma01g43600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGGCATCAATGCAATACCAGCATTTTTGGCCTCTCCTTCTCCTTCATATTCTCCCTATGGTGCCTCCTCTTCTTCTACATCAAGCTTCGCCTCGTTCATGGCACTGGAGCTATGTTAGAGCTCAATGAATCAGGTAGCTCCAACAACAGTCTTGGTCAGAAACTTGCAAAACCCTCCTACTCAATTCCTGAAACAACTAGTTTAGAACAAATGTTTTGGCACGTTTTAGGCAATGGTAGTAATTTGGTGTGCAAACTGCAGCCTCCACAAGACGTAAAGAAACTTAACCAGATTCCTGATGAGAAACTTCATCACAATTACGATGAATTTCGAGCGCAAGAAAAAACAAAGGGCATGAACTCTGCGCTTGTTAACATAACTCACAGGCTTGAATCTGATGGTTCTGTGTACAACTATGCCTCTGAGTCCAAAGGTGCAAAGGTGGTGGCCCATAATAAGGAGGCCAAAGGTGCAAAAAATATACTTGGGAAGGATCATGACAAGTACCTCAGAAACCCTTGTTCTGTTGAAGGAAAATTTGTTGTTATTGAGCTCTCAGAAGAGACCCTCGTTGATTCCGTGAAGATTGCAAACTTTGAGCATTATTCTTCCAACTTCAAGGAATTTGATTTGGCTGGAAGTTTGAACTATCCAACTGAAGAATGGAACATGCTGGGAAACTTCATTGCTGCCAATGTCAAGCATGCACAGATCTTTAAGCTGCCTGAACCCAAATGGGCAAGGTATTTAAAGTTGAGCTTGATTAGTCATTATGGATCCGAGTTTTACTGCACACTGAGTGTTGTGGAAGTTTATGGGATCAATGCAATAGAGCGGATGCTTAAGGATCTAATTGTTGCTTCTGTGGCATCCATTCCTGATAAGTTGCCTGTTCATAATATCACTGACACCTCTTCATTGAAATCAGAAGATGGTCAAATTGACAGAAATGGAAAAAAAGTTGATACTAAGAATGATACTGTGGCTGCTGAGATAACAAGCAATGATACTGCTCGGGAGTTTGACACAGAAGCGGTAAAAACAACAATGACTGCGAACTTGATTCCCGATCCTGTATTAGAACTTAGACAACAGCTAAATGGTAGGGTAGCTGGTGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAAGTCAGTGGAGGTAAACTTATCTTCCCTTGAGGATTACATCAAAGAATTGAACAGCAGACAACGGGTTAAAATACCAGATCTTGAGAAAGAGTTGTCCAGATTATCAGAAAGCCTTGGACAAAGCAAATCAGAGATCAAAGATCTCTGGCAGTGGAACACAAATATGGAAAAAGGAATATCTGAGGTTGAGTCTTGGAAAGATGCTGTCTCATCTCAACTTAATGAAATAGCCAGAGAAAATAGCATGCTAAGATGTTCGAAAGGTTGCAAGTAATCAAGTAAATATGGAAACCAAAGAACTTGCTGTATTAGCAACGAGTCTTGTTTTTGTGTGCCTTGCAGTTCTCAAGATAGTTTCAGTACATATGTTGACGTTTTCTGCATCATACAATGCAGATAAGGTGCGCCAGACAATTAGAGGATGGGCAACATTATTTGTATGCTGTAGTGTAACAATATTCATTATATTGTTTTATAGATAGGCATTCTATAGTTAATATGTTTAAAGTTGTCACGTAGTAAGCCATTTTTGTTACTGTACTGCAACATACAAAAGAAGTGGTTCCAGATGCTTCACTTCCATAGGTTGCAACTATGCAGTGAGATGCTGAACTCTTT
>Glyma01g43600.2 sequence type=CDS gene model=Glyma01g43600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGGCATCAATGCAATACCAGCATTTTTGGCCTCTCCTTCTCCTTCATATTCTCCCTATGGTGCCTCCTCTTCTTCTACATCAAGCTTCGCCTCGTTCATGGCACTGGAGCTATGTTAGAGCTCAATGAATCAGGTAGCTCCAACAACAGTCTTGGTCAGAAACTTGCAAAACCCTCCTACTCAATTCCTGAAACAACTAGTTTAGAACAAATGTTTTGGCACGTTTTAGGCAATGGTAGTAATTTGGTGTGCAAACTGCAGCCTCCACAAGACGTAAAGAAACTTAACCAGATTCCTGATGAGAAACTTCATCACAATTACGATGAATTTCGAGCGCAAGAAAAAACAAAGGGCATGAACTCTGCGCTTGTTAACATAACTCACAGGCTTGAATCTGATGGTTCTGTGTACAACTATGCCTCTGAGTCCAAAGGTGCAAAGGTGGTGGCCCATAATAAGGAGGCCAAAGGTGCAAAAAATATACTTGGGAAGGATCATGACAAGTACCTCAGAAACCCTTGTTCTGTTGAAGGAAAATTTGTTGTTATTGAGCTCTCAGAAGAGACCCTCGTTGATTCCGTGAAGATTGCAAACTTTGAGCATTATTCTTCCAACTTCAAGGAATTTGATTTGGCTGGAAGTTTGAACTATCCAACTGAAGAATGGAACATGCTGGGAAACTTCATTGCTGCCAATGTCAAGCATGCACAGATCTTTAAGCTGCCTGAACCCAAATGGGCAAGGTATTTAAAGTTGAGCTTGATTAGTCATTATGGATCCGAGTTTTACTGCACACTGAGTGTTGTGGAAGTTTATGGGATCAATGCAATAGAGCGGATGCTTAAGGATCTAATTGTTGCTTCTGTGGCATCCATTCCTGATAAGTTGCCTGTTCATAATATCACTGACACCTCTTCATTGAAATCAGAAGATGGTCAAATTGACAGAAATGGAAAAAAAGTTGATACTAAGAATGATACTGTGGCTGCTGAGATAACAAGCAATGATACTGCTCGGGAGTTTGACACAGAAGCGGTAAAAACAACAATGACTGCGAACTTGATTCCCGATCCTGTATTAGAACTTAGACAACAGCTAAATGGTAGGGTAGCTGGTGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAAGTCAGTGGAGGTAAACTTATCTTCCCTTGAGGATTACATCAAAGAATTGAACAGCAGACAACGGGTTAAAATACCAGATCTTGAGAAAGAGTTGTCCAGATTATCAGAAAGCCTTGGACAAAGCAAATCAGAGATCAAAGATCTCTGGCAGTGGAACACAAATATGGAAAAAGGAATATCTGAGGTTGAGTCTTGGAAAGATGCTGTCTCATCTCAACTTAATGAAATAGCCAGAGAAAATAGCATGCTAAGATCAGATGTTCGAAAGGTTGCAAGTAATCAAGTAAATATGGAAACCAAAGAACTTGCTGTATTAGCAACGAGTCTTGTTTTTGTGTGCCTTGCAGTTCTCAAGATAGTTTCAGTACATATGTTGACGTTTTCTGCATCATACAATGCAGATAAGGTGCGCCAGACAATTAGAGGATGGGCAACATTATTTGTATGCTGTAGTGTAACAATATTCATTATATTGTTTTATAGATAG >Glyma01g43600.3 sequence type=CDS gene model=Glyma01g43600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAGGCATCAATGCAATACCAGCATTTTTGGCCTCTCCTTCTCCTTCATATTCTCCCTATGGTGCCTCCTCTTCTTCTACATCAAGCTTCGCCTCGTTCATGGCACTGGAGCTATGTTAGAGCTCAATGAATCAGGTAGCTCCAACAACAGTCTTGGTCAGAAACTTGCAAAACCCTCCTACTCAATTCCTGAAACAACTAGTTTAGAACAAATGTTTTGGCACGTTTTAGGCAATGGTAGTAATTTGGTGTGCAAACTGCAGCCTCCACAAGACGTAAAGAAACTTAACCAGATTCCTGATGAGAAACTTCATCACAATTACGATGAATTTCGAGCGCAAGAAAAAACAAAGGGCATGAACTCTGCGCTTGTTAACATAACTCACAGGCTTGAATCTGATGGTTCTGTGTACAACTATGCCTCTGAGTCCAAAGGTGCAAAGGTGGTGGCCCATAATAAGGAGGCCAAAGGTGCAAAAAATATACTTGGGAAGGATCATGACAAGTACCTCAGAAACCCTTGTTCTGTTGAAGGAAAATTTGTTGTTATTGAGCTCTCAGAAGAGACCCTCGTTGATTCCGTGAAGATTGCAAACTTTGAGCATTATTCTTCCAACTTCAAGGAATTTGATTTGGCTGGAAGTTTGAACTATCCAACTGAAGAATGGAACATGCTGGGAAACTTCATTGCTGCCAATGTCAAGCATGCACAGATCTTTAAGCTGCCTGAACCCAAATGGGCAAGGTATTTAAAGTTGAGCTTGATTAGTCATTATGGATCCGAGTTTTACTGCACACTGAGTGTTGTGGAAGTTTATGGGATCAATGCAATAGAGCGGATGCTTAAGGATCTAATTGTTGCTTCTGTGGCATCCATTCCTGATAAGTTGCCTGTTCATAATATCACTGACACCTCTTCATTGAAATCAGAAGATGGTCAAATTGACAGAAATGGAAAAAAAGTTGATACTAAGAATGATACTGTGGCTGCTGAGATAACAAGCAATGATACTGCTCGGGAGTTTGACACAGAAGCGGTAAAAACAACAATGACTGCGAACTTGATTCCCGATCCTGTATTAGAACTTAGACAACAGCTAAATGGTAGGGTAGCTGGTGACACTGTTCTGAAGATTTTGATGCAGAAAGTGAAGTCAGTGGAGGTAAACTTATCTTCCCTTGAGGATTACATCAAAGAATTGAACAGCAGACAACGGGTTAAAATACCAGATCTTGAGAAAGAGTTGTCCAGATTATCAGAAAGCCTTGGACAAAGCAAATCAGAGATCAAAGATCTCTGGCAGTGGAACACAAATATGGAAAAAGGAATATCTGAGGTTGAGTCTTGGAAAGATGCTGTCTCATCTCAACTTAATGAAATAGCCAGAGAAAATAGCATGCTAAGATGTTCGAAAGGTTGCAAGTAA
>Glyma01g43600.2 sequence type=predicted peptide gene model=Glyma01g43600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRHQCNTSIFGLSFSFIFSLWCLLFFYIKLRLVHGTGAMLELNESGSSNNSLGQKLAKPSYSIPETTSLEQMFWHVLGNGSNLVCKLQPPQDVKKLNQIPDEKLHHNYDEFRAQEKTKGMNSALVNITHRLESDGSVYNYASESKGAKVVAHNKEAKGAKNILGKDHDKYLRNPCSVEGKFVVIELSEETLVDSVKIANFEHYSSNFKEFDLAGSLNYPTEEWNMLGNFIAANVKHAQIFKLPEPKWARYLKLSLISHYGSEFYCTLSVVEVYGINAIERMLKDLIVASVASIPDKLPVHNITDTSSLKSEDGQIDRNGKKVDTKNDTVAAEITSNDTAREFDTEAVKTTMTANLIPDPVLELRQQLNGRVAGDTVLKILMQKVKSVEVNLSSLEDYIKELNSRQRVKIPDLEKELSRLSESLGQSKSEIKDLWQWNTNMEKGISEVESWKDAVSSQLNEIARENSMLRSDVRKVASNQVNMETKELAVLATSLVFVCLAVLKIVSVHMLTFSASYNADKVRQTIRGWATLFVCCSVTIFIILFYR* >Glyma01g43600.3 sequence type=predicted peptide gene model=Glyma01g43600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRHQCNTSIFGLSFSFIFSLWCLLFFYIKLRLVHGTGAMLELNESGSSNNSLGQKLAKPSYSIPETTSLEQMFWHVLGNGSNLVCKLQPPQDVKKLNQIPDEKLHHNYDEFRAQEKTKGMNSALVNITHRLESDGSVYNYASESKGAKVVAHNKEAKGAKNILGKDHDKYLRNPCSVEGKFVVIELSEETLVDSVKIANFEHYSSNFKEFDLAGSLNYPTEEWNMLGNFIAANVKHAQIFKLPEPKWARYLKLSLISHYGSEFYCTLSVVEVYGINAIERMLKDLIVASVASIPDKLPVHNITDTSSLKSEDGQIDRNGKKVDTKNDTVAAEITSNDTAREFDTEAVKTTMTANLIPDPVLELRQQLNGRVAGDTVLKILMQKVKSVEVNLSSLEDYIKELNSRQRVKIPDLEKELSRLSESLGQSKSEIKDLWQWNTNMEKGISEVESWKDAVSSQLNEIARENSMLRCSKGCK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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