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Report for Sequence Feature Glyma01g43570

Feature Type:gene_model
Chromosome:Gm01
Start:54553818
stop:54554797
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g43570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23930AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:12436131-12436694 REVERSE LENGTH=187 SoyBaseE_val: 4.00E-68ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1JAE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JAE8_SOYBN SoyBaseE_val: 1.00E-130ISS
UniRef100_Q9T0A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant hydroxyproline-rich glycoprotein n=1 Tax=Arabidopsis thaliana RepID=Q9T0A8_ARATH SoyBaseE_val: 2.00E-65ISS

Expression Patterns of Glyma01g43570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43570
ParalogEvidenceComments
Glyma11g01911 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g226100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g43570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g43570
>Glyma01g43570.2   sequence type=CDS   gene model=Glyma01g43570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCCGTGGGCGTGGGTTATGTTTCACTTTGCCACATCAATCCATCCATCCTCACACTCCAACACCGAGCGAGCCATGGCGAAGCCCGAGAACCGCACTAACTTAGCTTCGTGTTTCGTGGCCACCGTTTTCTTGATCTTCCTTCTCATTGTGGTCTTCATCGTTTACTTCACTGTGTTCAAGCCGCAGTACCCCAAAATCGCCGTGAGCGCCATCCAGATCCCTTCCTTCTCCGCCACTAACGGCACCGTCAACTTCACCTTCTCCCAGTACGCCTCCGTTAGGAACCCTAACCGAGGCACCTTCTCCCACTACGACAGCTCGCTCCAGCTTCTCTACTACGGCAGACAGGTCGGCTTCATGTTCGTTCCGGCCGGAAAGATCGCCGCCGGCAGGACTCAGTACATGGCCGCCACCTTCACCGTTCAGTCCTTTCCCTTGGGCCTGGGGCCCACCTCCGTGGATGGGCCTAGTAGTGTGGGGCCCACGATGGAGATGGAGTCGAGGATAGAGATGGCGGGGCGCGTGAGAGTGTTACACCTTTTCAGTCATCACGTGGAGGCCAAAGCTCAATGCAGGGTCGCCATCGCCATCAACGATGGATCGGTGTTAGGTTTTCGGTGCTAA
Predicted protein sequences of Glyma01g43570
>Glyma01g43570.2   sequence type=predicted peptide   gene model=Glyma01g43570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCPWAWVMFHFATSIHPSSHSNTERAMAKPENRTNLASCFVATVFLIFLLIVVFIVYFTVFKPQYPKIAVSAIQIPSFSATNGTVNFTFSQYASVRNPNRGTFSHYDSSLQLLYYGRQVGFMFVPAGKIAAGRTQYMAATFTVQSFPLGLGPTSVDGPSSVGPTMEMESRIEMAGRVRVLHLFSHHVEAKAQCRVAIAINDGSVLGFRC*






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