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Report for Sequence Feature Glyma01g43490

Feature Type:gene_model
Chromosome:Gm01
Start:54498944
stop:54501533
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g43490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G23885AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12419472-12420240 FORWARD LENGTH=77 SoyBaseE_val: 8.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JAD8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAD8_SOYBN SoyBaseE_val: 2.00E-49ISS

Expression Patterns of Glyma01g43490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g43490 not represented in the dataset
Glyma01g43490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43490
ParalogEvidenceComments
Glyma11g02000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g225400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g43490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g43490
>Glyma01g43490.1   sequence type=CDS   gene model=Glyma01g43490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAGGTCAAGCTATGAAAAGAATCCCTCGCATCAAGTTCCCTCAGAGACATCCCAAACCTTCTTCTGGTTCTACACCTGAGACTCAAGCTTCGTCTTCAACAACTGATGTCAGTCTAGCGTTCTTTTCAAGTTCAAATGCCTCAACCTCAGTTGGAGGGAAGGCCTCTCTTCAACCCAAAAGAACTCCAGTGTCCAAAGAGGAGATTGAGGCAATTTTGTTGGGTGGCTGCTTCTAA
Predicted protein sequences of Glyma01g43490
>Glyma01g43490.1   sequence type=predicted peptide   gene model=Glyma01g43490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAGQAMKRIPRIKFPQRHPKPSSGSTPETQASSSTTDVSLAFFSSSNASTSVGGKASLQPKRTPVSKEEIEAILLGGCF*






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