Report for Sequence Feature Glyma01g43435
Feature Type: gene_model
Chromosome: Gm01
Start: 54438334
stop: 54442408
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g43435
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G46410 AT
Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr2:19049315-19050185 REVERSE LENGTH=94
SoyBase E_val: 7.00E-29 ISS
GO:0001708 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell fate specification
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009751 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0009888 GO-bp
Annotation by Michelle Graham. GO Biological Process: tissue development
SoyBase N/A ISS
GO:0009913 GO-bp
Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation
SoyBase N/A ISS
GO:0010063 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of trichoblast fate specification
SoyBase N/A ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_E4W697 UniRef
Annotation by Michelle Graham. Best UniRef hit: Transcription factor MYB363 n=1 Tax=Glycine max RepID=E4W697_SOYBN
SoyBase E_val: 2.00E-51 ISS
UniRef100_E4W697 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor MYB363 n=1 Tax=Glycine max RepID=E4W697_SOYBN
SoyBase E_val: 2.00E-51 ISS
Expression Patterns of Glyma01g43435
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g43435
Paralog Evidence Comments
Glyma11g02061 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g43435 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g224900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g43435
Transcripts of Glyma01g43435
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g43435.2 sequence type=transcript gene model=Glyma01g43435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGCTATAAACAGTTATATTGTTCATTTTTTTATTAATACATTTTATTATGACTGTATATTTTTTCTTATTTATTAAAAAATAATACTCCGCACTTTGAGAAAGTACTGTAGAATTAGATGGTAGCTATAAGTTATCTCACGTTTCCCCACTTTGAGAACAGATTATCTTGAACTCCTCTGATCAGCAGTCTCTGCACCCCTCCCTCCTTGTTTGTATCATATCAGGCAGCTCAGAAGGCAAAGATAGATCCATGTCCACCACCGCAACTACAACCTCTGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGATTTTCTCTGGTCATGTATCTTTTCTGGGCATAATTCTGCTAAATATATAAAATTGGGTTAAATATATTTTTGGTGTCTATAAAATTTCTTTTTTTTTTTGGTCTCTGTGAATTATTTTGTATATTTTTAGTCTCTTGTTTATTTTTTTGTTATCAATATCAGTTTCTTAAATTTTTTATACTTTTTTCTGCCATTTTTAATCTCTTTGATAGACTGATATTTATGACGAAAAAATTAATAAATGATTTGAAATAGTAAAAAAATGAAATTTCATTAGAGTTAAAAATATATTTAACCCTATAAATTCTGTTCTAAATCTTACAGAATTATCGTCAATTGTATTTCTTGTCGTTGAGATGAGAATTAATGTACACTTTCGTTAATCGGTCATGAGTATCTCATATAGAAGCTATGGAAAAGTTTGCATGTTGGTTTGTATAAAAGAAAAAGGTGTGTATTAGTCTGATTTAATTTGAGTGATTTATTTGAATTTATGATTTTTTCATTTATGTTATGGGGATAACCCCAACGATACATAATAGGTTGAGTTCTACTAAGCTATGCCGACATATAAAAGAGAAGCCACATATGTGTAATTGTCG
Coding sequences of Glyma01g43435
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g43435.1 sequence type=CDS gene model=Glyma01g43435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCACCACCGCAACTACAACCTCTGAAGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGA
>Glyma01g43435.2 sequence type=CDS gene model=Glyma01g43435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCACCACCGCAACTACAACCTCTGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGA
Predicted protein sequences of Glyma01g43435
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g43435.1 sequence type=predicted peptide gene model=Glyma01g43435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTTATTTSEEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHGDAFSVKRNGSKTQDS*
>Glyma01g43435.2 sequence type=predicted peptide gene model=Glyma01g43435 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHGDAFSVKRNGSKTQDS*