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Report for Sequence Feature Glyma01g43435

Feature Type:gene_model
Chromosome:Gm01
Start:54438334
stop:54442408
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46410AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr2:19049315-19050185 REVERSE LENGTH=94 SoyBaseE_val: 7.00E-29ISS
GO:0001708GO-bp Annotation by Michelle Graham. GO Biological Process: cell fate specification SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0009913GO-bp Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation SoyBaseN/AISS
GO:0010063GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of trichoblast fate specification SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_E4W697UniRef Annotation by Michelle Graham. Best UniRef hit: Transcription factor MYB363 n=1 Tax=Glycine max RepID=E4W697_SOYBN SoyBaseE_val: 2.00E-51ISS
UniRef100_E4W697UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor MYB363 n=1 Tax=Glycine max RepID=E4W697_SOYBN SoyBaseE_val: 2.00E-51ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g43435 not represented in the dataset

Glyma01g43435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g02061 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g224900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g43435.2   sequence type=transcript   gene model=Glyma01g43435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTATAAACAGTTATATTGTTCATTTTTTTATTAATACATTTTATTATGACTGTATATTTTTTCTTATTTATTAAAAAATAATACTCCGCACTTTGAGAAAGTACTGTAGAATTAGATGGTAGCTATAAGTTATCTCACGTTTCCCCACTTTGAGAACAGATTATCTTGAACTCCTCTGATCAGCAGTCTCTGCACCCCTCCCTCCTTGTTTGTATCATATCAGGCAGCTCAGAAGGCAAAGATAGATCCATGTCCACCACCGCAACTACAACCTCTGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGATTTTCTCTGGTCATGTATCTTTTCTGGGCATAATTCTGCTAAATATATAAAATTGGGTTAAATATATTTTTGGTGTCTATAAAATTTCTTTTTTTTTTTGGTCTCTGTGAATTATTTTGTATATTTTTAGTCTCTTGTTTATTTTTTTGTTATCAATATCAGTTTCTTAAATTTTTTATACTTTTTTCTGCCATTTTTAATCTCTTTGATAGACTGATATTTATGACGAAAAAATTAATAAATGATTTGAAATAGTAAAAAAATGAAATTTCATTAGAGTTAAAAATATATTTAACCCTATAAATTCTGTTCTAAATCTTACAGAATTATCGTCAATTGTATTTCTTGTCGTTGAGATGAGAATTAATGTACACTTTCGTTAATCGGTCATGAGTATCTCATATAGAAGCTATGGAAAAGTTTGCATGTTGGTTTGTATAAAAGAAAAAGGTGTGTATTAGTCTGATTTAATTTGAGTGATTTATTTGAATTTATGATTTTTTCATTTATGTTATGGGGATAACCCCAACGATACATAATAGGTTGAGTTCTACTAAGCTATGCCGACATATAAAAGAGAAGCCACATATGTGTAATTGTCG

>Glyma01g43435.1   sequence type=CDS   gene model=Glyma01g43435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACCACCGCAACTACAACCTCTGAAGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGA

>Glyma01g43435.2   sequence type=CDS   gene model=Glyma01g43435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACCACCGCAACTACAACCTCTGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCTGGTCGCATTCCCGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGCGATGCTTTTTCTGTTAAAAGAAACGGAAGTAAAACCCAAGACTCGTGA

>Glyma01g43435.1   sequence type=predicted peptide   gene model=Glyma01g43435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTATTTSEEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHGDAFSVKRNGSKTQDS*

>Glyma01g43435.2   sequence type=predicted peptide   gene model=Glyma01g43435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRIPGRKAEEIERFWIMRHGDAFSVKRNGSKTQDS*







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