Glyma01g43420 - SoyBase

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Report for Sequence Feature Glyma01g43420

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54433422
stop:	54435852
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g43420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11070	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:6759303-6760763 FORWARD LENGTH=313	SoyBase	E_val: 1.00E-58	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_A7LHF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY12 (Fragment) n=1 Tax=Glycine max RepID=A7LHF9_SOYBN	SoyBase	E_val: 7.00E-139	ISS
UniRef100_I1JAC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAC7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g43420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g43420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g224800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g43420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g43420

Limit To All Plant Sequences

>Glyma01g43420.1   sequence type=CDS   gene model=Glyma01g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCGACAGGAATTGGGAGCAGAACGCACTCATCAGTGAGCTAATTCAGGGGTTGGAGGTAGCAAGAAAGTTGAAGGAAGACTTGAGTTCAGCCTCTTCGGTTGACGCTAGGGACTCACACTCACTACTGCAGAGGATATTGTCTTCTTATGACAAGGCTTTGCTTTTTCTAAGATGGAATGAATCAGTGTCCATGCAACAACCAACTAAAACTTCTTCACCACAGTCACCACTATCCATTGACAAAACTCCTCTGAGGGAAGACGCTGAAGAAGATCATCAAGAACTTAAACACAATTCGAAGAAAAGAAAGATGATGCCGAAATGGACGGAACATATTAGAGTGAAGATCGAGAACGGCGTTGAAGGACCCCTCGAAGATGGTTACAGCTGGAGAAAATATGGACAAAAAGATATCCTTAGTGCAAAATATCCCAGAAGCTATTATAGGTGCACCTTCCGCAAAACAAAGGGGTGCTTTGCCACAAAGCAAGTGCAGAGATCAGAAGAAGACCACACTATCTTTGACATAACTTACCGAGGAAGTCACACATGTAAGCGAAACGATGCCGTTCTGCCGCCAAAGTCACCAGATTATACACAAGACGGCTCCTTGACTGTCAAAACGGATAACATAACGGCACCTTCCGCTTCGTTTGGATGCATGGCGCAAGATAACTACCACGACTTATTTCCTTCTTTGGTCTTAGAGAATGATCCATTTTTTAGCACCCTTTCCCAAACATCCTCGTTATCTGCAAACACACCTGAATCAAATTATTTTGTGTCTCCGACTTTCCTCGAACATGAATTCGATGGGGTCTGTAACAAGCCCTGCCCTGATTCTGAACTTGCCCGGCTGGTTTCAGCTGATACATCAATCACCAGTTCTCCAATTTTCGACTTTAATTTCTCGCTCGATGCAGTGGGAATTGATTATCCAAATTTCCCCTTCAATATATGA

Predicted protein sequences of Glyma01g43420

Limit To All Plant Sequences

>Glyma01g43420.1   sequence type=predicted peptide   gene model=Glyma01g43420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDRNWEQNALISELIQGLEVARKLKEDLSSASSVDARDSHSLLQRILSSYDKALLFLRWNESVSMQQPTKTSSPQSPLSIDKTPLREDAEEDHQELKHNSKKRKMMPKWTEHIRVKIENGVEGPLEDGYSWRKYGQKDILSAKYPRSYYRCTFRKTKGCFATKQVQRSEEDHTIFDITYRGSHTCKRNDAVLPPKSPDYTQDGSLTVKTDNITAPSASFGCMAQDNYHDLFPSLVLENDPFFSTLSQTSSLSANTPESNYFVSPTFLEHEFDGVCNKPCPDSELARLVSADTSITSSPIFDFNFSLDAVGIDYPNFPFNI*

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