SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18440 | AT | Annotation by Michelle Graham. TAIR10: aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598 | SoyBase | E_val: 3.00E-91 | ISS |
| GO:0010044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to aluminum ion | SoyBase | N/A | ISS |
| GO:0015743 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malate transport | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0005253 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: anion channel activity | SoyBase | N/A | ISS |
| KOG4711 | KOG | Predicted membrane protein | JGI | ISS | |
| PF11744 | PFAM | Aluminium activated malate transporter | JGI | ISS | |
| UniRef100_E4MWQ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-15-I15 n=1 Tax=Eutrema halophilum RepID=E4MWQ0_THEHA | SoyBase | E_val: 1.00E-89 | ISS |
| UniRef100_I1JAA7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JAA7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g43250 not represented in the dataset |
Glyma01g43250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g223300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g43250.2 sequence type=CDS gene model=Glyma01g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGCATTGAAATTAGCATTCCTACTAAACCTGAGCTGCATGAGAGTGGCACGAAATCTGGAGCCAACAAAGCTTGGCTTCGAGATCAGATTCAGAGTGTATGGGATTTTTGCAAGGAAGACACTGGTAGAGAAATATTTGCACTCAAAGCTGGGCTGGCTGTTCTTCTTGTGTCTTTGCTTATATTATTTGAAGCCCTATGCCAAGTCTTTGGGCCAAATATTGTATGGGCCATTCTCACTGCTGTCCTTGTATTCGAAGACACTGTTGGAGCAACGTTTAATCGAGGATTTAATCGAGCACTGGGAACCTTGGTGGCGGGAATCTTGGCCATTGTTGTTGCTGAGACAGCACTATCCTGTGGCCATGTCGCTGAGCCTATTATCATTGGCCTTAGTATTTTCATGATCGCCGTCATAACTTCGTACATGAAAACTTGGCCACCGCTTGTGCAGTATGAGTACGGGTTTAGGGTGGCACTGCTAACCTATTGCTTGATCATAGTTTCTGACTATCGAATGGGAAATCCAATTAGAACTATGTTCGATCGGTTGTATTCCATCGCCATTGGAGGAATAATATCAATGTTGGTCAATGTCTCTATTTTTCCTCTATGGGCTGGGGACCAGTTACATAAAGAATTGGTCAAAAACTTTCATTCAGTGGCAGATTCACTTGAGGAATGTGTCAAGAAATATTTAGAAGATGTACCAGAGAAGTCTAAAGTCACCATGGCTAGCATAGATGCATTTCCAGACGAACCGGCTTATAAGAGATGTCAAAGCAGCTTGAATTCAGGGTCAAAGCTTGAGACTCTGGCAAAATCAGCAAAATGGGAACCACCACATGGTAGATTCATGCACATTTCATATCCATGGGCACAATATGTTAATGTTGGGGCAGTCTTGCGATACTGTGCTTATGAAGTTATGGCACTCCATAGCATTGTACACGCTGAAATTCAGGTACCCTACAAATTGCGGGTTGTGTTCCAAACTGAAATCCAAGAGGCATCAAACCAAGCTGCAGAGATAGTAAGGATTTTGGGAAGAGACATTAGCCGCATGGAGTGGAGTCTGAAAAATTCCCACATTAACAGGCTTCATAGCTCTATTAAGAGGCTGCAACGTTCTATGTACTTCCAATATTCTTATCTACTGACATCCACTTTTGAACCCCCTATCCTTGATAACTCTTCAAAGTCCTTTGCAAACAATATTTCACATATCTTCTACCATTTACCGTATCAAAGGGAGATGGCAGAACAAGTAGAATGTTATCATGAGATAACGAGGAAGCAGTTGAAAAGACTATATTCTTGGCCACCTAGAGAAGTGGATGCTTTTGAAGAAGATAGTGAGAAAAACATTAAGTTGTTAGCTGGGGAGAGAAAGGCGAAAGCCTTAGAGAGTACTGCAATTTTGTCATTGACTAACTTCGCTTTCTCGCTCGTGGAGTTTGTGGCAAGAGTTGACCATTTGATAGAGGCAGTTGATAAGCTTTCCAAGATGGCCAAGTTCAAGCCTAACGATGGGTTATAG
>Glyma01g43250.2 sequence type=predicted peptide gene model=Glyma01g43250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESIEISIPTKPELHESGTKSGANKAWLRDQIQSVWDFCKEDTGREIFALKAGLAVLLVSLLILFEALCQVFGPNIVWAILTAVLVFEDTVGATFNRGFNRALGTLVAGILAIVVAETALSCGHVAEPIIIGLSIFMIAVITSYMKTWPPLVQYEYGFRVALLTYCLIIVSDYRMGNPIRTMFDRLYSIAIGGIISMLVNVSIFPLWAGDQLHKELVKNFHSVADSLEECVKKYLEDVPEKSKVTMASIDAFPDEPAYKRCQSSLNSGSKLETLAKSAKWEPPHGRFMHISYPWAQYVNVGAVLRYCAYEVMALHSIVHAEIQVPYKLRVVFQTEIQEASNQAAEIVRILGRDISRMEWSLKNSHINRLHSSIKRLQRSMYFQYSYLLTSTFEPPILDNSSKSFANNISHIFYHLPYQREMAEQVECYHEITRKQLKRLYSWPPREVDAFEEDSEKNIKLLAGERKAKALESTAILSLTNFAFSLVEFVARVDHLIEAVDKLSKMAKFKPNDGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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