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Report for Sequence Feature Glyma01g43020

Feature Type:gene_model
Chromosome:Gm01
Start:54118972
stop:54119397
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g43020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61460AT Annotation by Michelle Graham. TAIR10: brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170 SoyBaseE_val: 2.00E-55ISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF27Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9RCF4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RCF4_RICCO SoyBaseE_val: 1.00E-60ISS
UniRef100_I1JA86UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA86_SOYBN SoyBaseE_val: 4.00E-100ISS

Expression Patterns of Glyma01g43020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g43020 not represented in the dataset
Glyma01g43020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g43020
ParalogEvidenceComments
Glyma11g02470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g43020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g221300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g43020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g43020
>Glyma01g43020.1   sequence type=CDS   gene model=Glyma01g43020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTTCCAGTGGGGTACACAGAATTGGTGATGCCCAAGGTGTTTCTGCAGGTGCTATCGGTATTGGGGTTCATCAGGAGACTCATCACAATCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAATCCGACATTGCGGGGCCGGAGAGGGCGGTGTCGGCGGTGCTGATGAGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGAGATGGCGGTGGAGGCGGCGGAGAGCTGCGCGGTGTGCCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGTCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGCCCCCTGTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCATTCTATTACAATCATCACTAG
Predicted protein sequences of Glyma01g43020
>Glyma01g43020.1   sequence type=predicted peptide   gene model=Glyma01g43020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFPVGYTELVMPKVFLQVLSVLGFIRRLITILLCYMGFHDFFESDIAGPERAVSAVLMREILPVVKFSEMEMAVEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFYYNHH*






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