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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11560 | AT | Annotation by Michelle Graham. TAIR10: bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| KOG1886 | KOG | BAH domain proteins | JGI | ISS | |
| PTHR12505 | Panther | PHD FINGER TRANSCRIPTION FACTOR | JGI | ISS | |
| PTHR12505:SF9 | Panther | BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PR | JGI | ISS | |
| PF01426 | PFAM | BAH domain | JGI | ISS | |
| PF07500 | PFAM | Transcription factor S-II (TFIIS), central domain | JGI | ISS | |
| UniRef100_G7KC24 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BAH and coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KC24_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JA76 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA76_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g42920 not represented in the dataset |
Glyma01g42920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g02560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g220200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42920.2 sequence type=transcript gene model=Glyma01g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGGGTCAGGCGAGTGAAATGGGTTATCGTGTATGTATGTGACTCAGCTTGACCAGACCAGAGTATATTCATTGAGTTTGTTTTACGTTACATTGCCATTTAGGCGGTGATCGTAACTGAGAATTGGAAATGGTGAATCGTCGACGCCTCACCCGGGTGGCGACGAGCGACGATGAAGACGAGGCACCGCGTCCACAACGCACGCGGAAGAGGATGAGGCTTATCGAGGAAGATAACGATGATGACGAGAATGAAGAAGAGAAACAACAAGAGGTGCCGGAACTGCCTCAGCCTGCGGAGGACGCTAAGCCTCTTGGCGAACCCGTTAGGGTTTCGGGAAAAGGAAGAGGAAGGAAGAGGCACTATGATTCCTTCGAGTTCGATGGCATCCAATATATTCTCGAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTTATCGTCCCGAAGAAGCCGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACCAGGGAACTGTTTTATAGTTTCCACCGTGACGATGTTCCTGCGGAGGCTGTTATGCACAAGTGTGTGGTACATTTTGTTCCCAGACACAAACAGCTTCCAAAGCGTAAGGATCACCCGGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAGCTCTGGAGGCTGAGTGATAAGGATTATGAGGATATTAAGCAGCAAGAGATTGATGTGCTTGTTGAGAAGACTCTGCAACGTATTGGTGAACTACTTGACCTTGAGCCTGAGGAAGCCCCTGATGACGATGAGGATCAATTGAAAAATAGAAAAAGCTTAAGGAGAAAGAGTGTTTCACCTCTTGATGTTTCAAAGGAGGAAGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCGGGTTGCATAACTAATCCCTCAGAGTATTATCGGATATTGGTAGAATTCAATGCACTAACTGGAGATAGCCATCGAGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCATTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTAGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATAGAAGTTCAGAGTCAGCAAATGTCTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATTTGGCCAGATGCTGGTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGCCAATTAGCTTTTAATTTCCAGAAAAATGCAGTGTTAGCACGCCGTCTATTAAGTGGAGAGTTGGAGCCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGGAGCCTGACAAGATCCAGCACTTGCAAGTAAACTTTCCCTGCTACAATTATTATCTCATTAACTGTTATTAAGTTGTGTGAAGATATCTGCCGGCTTCAGCTTTCCTTCCCATGAAACAGATGACAGATGCTCGCTGCTCAAAATGCATGGATTGTAAGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAGCGCTATAGGCCACTGCAAAATTTAAAGATGTTCAGATGAAGCTGGTGAGCCGCTGTGAATCCAATGTCAGCCAATGGCATCTTTTAAAAGACAAGTTAATTGTATATCCCCTGAAATGATTTGGAAAGTCCAGGAAAGGTGACGATATTGAGGCTATGAGACGTGTATCTATCCCGGCTAGTGTTAAGTCATAGCAAAAGACTGTTTATGAATAGATATAGTTCTCTTCCTATTTGACTCTGCGCATATCATACAACAAACGGTTGGTTTTGTGTAATACTTCGCATAAACTAGCTGGTGTTACCTCATACATCATAAGGGTAGTGTTAGCCATAGAAGTAAATTTCTTAGTTTGACTTTTACTTTGTAGTATTAACTTGTTTCAATCATTAATAAGCAAA
>Glyma01g42920.1 sequence type=CDS gene model=Glyma01g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATCGTCGACGCCTCACCCGGGTGGCGACGAGCGACGATGAAGACGAGGCACCGCGTCCACAACGCACGCGGAAGAGGATGAGGCTTATCGAGGAAGATAACGATGATGACGAGAATGAAGAAGAGAAACAACAAGAGGTGCCGGAACTGCCTCAGCCTGCGGAGGACGCTAAGCCTCTTGGCGAACCCGTTAGGGTTTCGGGAAAAGGAAGAGGAAGGAAGAGGCACTATGATTCCTTCGAGTTCGATGGCATCCAATATATTCTCGAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTTATCGTCCCGAAGAAGCCGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACCAGGGAACTGTTTTATAGTTTCCACCGTGACGATGTTCCTGCGGAGGCTGTTATGCACAAGTGTGTGGTACATTTTGTTCCCAGACACAAACAGCTTCCAAAGCGTAAGGATCACCCGGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAGCTCTGGAGGCTGAGTGATAAGGATTATGAGGATATTAAGCAGCAAGAGATTGATGTGCTTGTTGAGAAGACTCTGCAACGTATTGGTGAACTACTTGACCTTGAGCCTGAGGAAGCCCCTGATGACGATGAGGATCAATTGAAAAATAGAAAAAGCTTAAGGAGAAAGAGTGTTTCACCTCTTGATGTTTCAAAGGAGGAAGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCGGGTTGCATAACTAATCCCTCAGAGTATTATCGGATATTGGTAGAATTCAATGCACTAACTGGAGATAGCCATCGAGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCATTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTAGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATAGAAGTTCAGAGTCAGCAAATGTCTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATTTGGCCAGATGCTGGTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGCCAATTAGCTTTTAATTTCCAGAAAAATGCAGTGTTAGCACGCCGTCTATTAAGTGGAGAGTTGGAGCCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGGAGCCTGACAAGATCCAGCACTTGCAAATGACAGATGCTCGCTGCTCAAAATGCATGGATTGTAAGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAGCGCTATAG >Glyma01g42920.2 sequence type=CDS gene model=Glyma01g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATCGTCGACGCCTCACCCGGGTGGCGACGAGCGACGATGAAGACGAGGCACCGCGTCCACAACGCACGCGGAAGAGGATGAGGCTTATCGAGGAAGATAACGATGATGACGAGAATGAAGAAGAGAAACAACAAGAGGTGCCGGAACTGCCTCAGCCTGCGGAGGACGCTAAGCCTCTTGGCGAACCCGTTAGGGTTTCGGGAAAAGGAAGAGGAAGGAAGAGGCACTATGATTCCTTCGAGTTCGATGGCATCCAATATATTCTCGAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTTATCGTCCCGAAGAAGCCGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACCAGGGAACTGTTTTATAGTTTCCACCGTGACGATGTTCCTGCGGAGGCTGTTATGCACAAGTGTGTGGTACATTTTGTTCCCAGACACAAACAGCTTCCAAAGCGTAAGGATCACCCGGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAGCTCTGGAGGCTGAGTGATAAGGATTATGAGGATATTAAGCAGCAAGAGATTGATGTGCTTGTTGAGAAGACTCTGCAACGTATTGGTGAACTACTTGACCTTGAGCCTGAGGAAGCCCCTGATGACGATGAGGATCAATTGAAAAATAGAAAAAGCTTAAGGAGAAAGAGTGTTTCACCTCTTGATGTTTCAAAGGAGGAAGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCGGGTTGCATAACTAATCCCTCAGAGTATTATCGGATATTGGTAGAATTCAATGCACTAACTGGAGATAGCCATCGAGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCATTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTAGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATAGAAGTTCAGAGTCAGCAAATGTCTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATTTGGCCAGATGCTGGTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGCCAATTAGCTTTTAATTTCCAGAAAAATGCAGTGTTAGCACGCCGTCTATTAAGTGGAGAGTTGGAGCCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGGAGCCTGACAAGATCCAGCACTTGCAAGTAAACTTTCCCTGCTACAATTATTATCTCATTAACTGTTATTAA
>Glyma01g42920.1 sequence type=predicted peptide gene model=Glyma01g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNRRRLTRVATSDDEDEAPRPQRTRKRMRLIEEDNDDDENEEEKQQEVPELPQPAEDAKPLGEPVRVSGKGRGRKRHYDSFEFDGIQYILEDPVLLVPEEKGQKPYVAIIKDITQSISGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVEKTLQRIGELLDLEPEEAPDDDEDQLKNRKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPAGCITNPSEYYRILVEFNALTGDSHRDKWLERLLQRIHYMCDSNDSKERDKGLGNVNSDEINGGSKHRSSESANVCQDKVQKSSKSFIWPDAGVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGELEPSKILNMTPNELKEGLVAEEKTKEEPDKIQHLQMTDARCSKCMDCKVALREIIQAGNNERYQLECVSCGHSWYASRDEVSMLTIDASDSKGNIGTAL* >Glyma01g42920.2 sequence type=predicted peptide gene model=Glyma01g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNRRRLTRVATSDDEDEAPRPQRTRKRMRLIEEDNDDDENEEEKQQEVPELPQPAEDAKPLGEPVRVSGKGRGRKRHYDSFEFDGIQYILEDPVLLVPEEKGQKPYVAIIKDITQSISGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVEKTLQRIGELLDLEPEEAPDDDEDQLKNRKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPAGCITNPSEYYRILVEFNALTGDSHRDKWLERLLQRIHYMCDSNDSKERDKGLGNVNSDEINGGSKHRSSESANVCQDKVQKSSKSFIWPDAGVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGELEPSKILNMTPNELKEGLVAEEKTKEEPDKIQHLQVNFPCYNYYLINCY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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